Strain identifier
BacDive ID: 131492
Type strain:
Species: Geodermatophilus bullaregiensis
Strain history: <- M. Gtari, Tunisia; BMG 841 <- K. Hezbri, Tunisia
NCBI tax ID(s): 1564160 (species)
General
@ref: 22719
BacDive-ID: 131492
DSM-Number: 46841
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Geodermatophilus bullaregiensis DSM 46841 is a mesophilic, Gram-positive bacterium that was isolated from surface of a marble monument.
NCBI tax id
- NCBI tax id: 1564160
- Matching level: species
strain history
- @ref: 22719
- history: <- M. Gtari, Tunisia; BMG 841 <- K. Hezbri, Tunisia
doi: 10.13145/bacdive131492.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Geodermatophilales
- family: Geodermatophilaceae
- genus: Geodermatophilus
- species: Geodermatophilus bullaregiensis
- full scientific name: Geodermatophilus bullaregiensis Hezbri et al. 2015
@ref: 22719
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Geodermatophilaceae
genus: Geodermatophilus
species: Geodermatophilus bullaregiensis
full scientific name: Geodermatophilus bullaregiensis Hezbri et al. 2015
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
22719 | https://www.dsmz.de/microorganisms/photos/DSM_46841.jpg | Medium 65 28°C | © Leibniz-Institut DSMZ |
66793 | EM_DSM_46841_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_46841_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_46841_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_46841_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_46841_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 22719
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 22719
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 96.316
Isolation, sampling and environmental information
isolation
- @ref: 22719
- sample type: surface of a marble monument
- geographic location: north western part, ruin of the Roman town Bulla Regia
- country: Tunisia
- origin.country: TUN
- continent: Africa
isolation source categories
- Cat1: #Engineered
taxonmaps
- @ref: 69479
- File name: preview.99_154108.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_2039;97_3177;98_101655;99_154108&stattab=map
- Last taxonomy: Geodermatophilus bullaregiensis subclade
- 16S sequence: LN626271
- Sequence Identity:
- Total samples: 498
- soil counts: 385
- aquatic counts: 28
- animal counts: 40
- plant counts: 45
Safety information
risk assessment
- @ref: 22719
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22719
- description: Geodermatophilus bullaregiensis BMG 841 partial 16S rRNA gene, type strain BMG841T
- accession: LN626271
- length: 1458
- database: ena
- NCBI tax ID: 1564160
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Geodermatophilus bullaregiensis DSM 46841 | GCA_016907675 | contig | ncbi | 1564160 |
66792 | Geodermatophilus bullaregiensis strain DSM 46841 | 1564160.3 | wgs | patric | 1564160 |
66792 | Geodermatophilus bullaregiensis DSM 46841 | 2893642356 | draft | img | 1564160 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 78 | no |
motile | yes | 71.833 | no |
gram-positive | yes | 93.008 | no |
anaerobic | no | 98.984 | no |
aerobic | yes | 92.378 | no |
halophile | no | 87.546 | no |
spore-forming | no | 58.42 | no |
thermophile | no | 98.299 | yes |
glucose-util | yes | 88.218 | no |
flagellated | no | 91.491 | no |
glucose-ferment | no | 89.649 | no |
External links
@ref: 22719
culture collection no.: DSM 46841, CECT 8821, BMG 841
straininfo link
- @ref: 89909
- straininfo: 402160
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 26025305 | Description of Geodermatophilus bullaregiensis sp. nov. | Hezbri K, Ghodhbane-Gtari F, Del Carmen Montero-Calasanz M, Sghaier H, Rohde M, Schumann P, Klenk HP, Gtari M | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0494-3 | 2015 | Actinobacteria/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Carbohydrates/analysis, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Fatty Acids/analysis, Glycolipids/analysis, Hydrogen-Ion Concentration, Microscopy, Electron, Scanning, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature, Tunisia, Vitamin K 2/analysis | Genetics |
Phylogeny | 28289918 | Geodermatophilus daqingensis sp. nov., isolated from petroleum-contaminated soil. | Wang Y, Zhang L, Zhang X, Huang J, Zhao Y, Zhao Y, Liu J, Huang C, Wang J, Hu Y, Ren G, Xu X | Antonie Van Leeuwenhoek | 10.1007/s10482-017-0853-3 | 2017 | Actinobacteria/*isolation & purification/metabolism, Bacterial Typing Techniques, China, DNA, Bacterial, Fatty Acids, *Petroleum, Phospholipids, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Soil, *Soil Microbiology | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
22719 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46841 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46841) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66793 | Mukherjee et al. | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 10.1038/nbt.3886 | 35: 676-683 2017 | 28604660 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
89909 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402160.1 |