Strain identifier

BacDive ID: 131492

Type strain: Yes

Species: Geodermatophilus bullaregiensis

Strain history: <- M. Gtari, Tunisia; BMG 841 <- K. Hezbri, Tunisia

NCBI tax ID(s): 1564160 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22719

BacDive-ID: 131492

DSM-Number: 46841

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive

description: Geodermatophilus bullaregiensis DSM 46841 is a mesophilic, Gram-positive bacterium that was isolated from surface of a marble monument.

NCBI tax id

  • NCBI tax id: 1564160
  • Matching level: species

strain history

  • @ref: 22719
  • history: <- M. Gtari, Tunisia; BMG 841 <- K. Hezbri, Tunisia

doi: 10.13145/bacdive131492.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Geodermatophilales
  • family: Geodermatophilaceae
  • genus: Geodermatophilus
  • species: Geodermatophilus bullaregiensis
  • full scientific name: Geodermatophilus bullaregiensis Hezbri et al. 2015

@ref: 22719

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Geodermatophilaceae

genus: Geodermatophilus

species: Geodermatophilus bullaregiensis

full scientific name: Geodermatophilus bullaregiensis Hezbri et al. 2015

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

multimedia

@refmultimedia contentcaptionintellectual property rights
22719https://www.dsmz.de/microorganisms/photos/DSM_46841.jpgMedium 65 28°C© Leibniz-Institut DSMZ
66793EM_DSM_46841_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_46841_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_46841_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_46841_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_46841_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 22719
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 22719
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 96.316

Isolation, sampling and environmental information

isolation

  • @ref: 22719
  • sample type: surface of a marble monument
  • geographic location: north western part, ruin of the Roman town Bulla Regia
  • country: Tunisia
  • origin.country: TUN
  • continent: Africa

isolation source categories

  • Cat1: #Engineered

taxonmaps

  • @ref: 69479
  • File name: preview.99_154108.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_2039;97_3177;98_101655;99_154108&stattab=map
  • Last taxonomy: Geodermatophilus bullaregiensis subclade
  • 16S sequence: LN626271
  • Sequence Identity:
  • Total samples: 498
  • soil counts: 385
  • aquatic counts: 28
  • animal counts: 40
  • plant counts: 45

Safety information

risk assessment

  • @ref: 22719
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22719
  • description: Geodermatophilus bullaregiensis BMG 841 partial 16S rRNA gene, type strain BMG841T
  • accession: LN626271
  • length: 1458
  • database: ena
  • NCBI tax ID: 1564160

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Geodermatophilus bullaregiensis DSM 46841GCA_016907675contigncbi1564160
66792Geodermatophilus bullaregiensis strain DSM 468411564160.3wgspatric1564160
66792Geodermatophilus bullaregiensis DSM 468412893642356draftimg1564160

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes78no
motileyes71.833no
gram-positiveyes93.008no
anaerobicno98.984no
aerobicyes92.378no
halophileno87.546no
spore-formingno58.42no
thermophileno98.299yes
glucose-utilyes88.218no
flagellatedno91.491no
glucose-fermentno89.649no

External links

@ref: 22719

culture collection no.: DSM 46841, CECT 8821, BMG 841

straininfo link

  • @ref: 89909
  • straininfo: 402160

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26025305Description of Geodermatophilus bullaregiensis sp. nov.Hezbri K, Ghodhbane-Gtari F, Del Carmen Montero-Calasanz M, Sghaier H, Rohde M, Schumann P, Klenk HP, Gtari MAntonie Van Leeuwenhoek10.1007/s10482-015-0494-32015Actinobacteria/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Carbohydrates/analysis, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Fatty Acids/analysis, Glycolipids/analysis, Hydrogen-Ion Concentration, Microscopy, Electron, Scanning, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature, Tunisia, Vitamin K 2/analysisGenetics
Phylogeny28289918Geodermatophilus daqingensis sp. nov., isolated from petroleum-contaminated soil.Wang Y, Zhang L, Zhang X, Huang J, Zhao Y, Zhao Y, Liu J, Huang C, Wang J, Hu Y, Ren G, Xu XAntonie Van Leeuwenhoek10.1007/s10482-017-0853-32017Actinobacteria/*isolation & purification/metabolism, Bacterial Typing Techniques, China, DNA, Bacterial, Fatty Acids, *Petroleum, Phospholipids, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Soil, *Soil MicrobiologyTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22719Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46841Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46841)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66793Mukherjee et al.GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life10.1038/nbt.3886 35: 676-683 201728604660
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
89909Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402160.1