Strain identifier

BacDive ID: 13149

Type strain: Yes

Species: Pseudomonas moraviensis

Strain Designation: 1B4

Strain history: DSM 16007 <-- L. Tvrzová 1B4.

NCBI tax ID(s): 321662 (species)

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General

@ref: 6238

BacDive-ID: 13149

DSM-Number: 16007

keywords: 16S sequence, Bacteria, mesophilic

description: Pseudomonas moraviensis 1B4 is a mesophilic bacterium that was isolated from soil besides highway.

NCBI tax id

  • NCBI tax id: 321662
  • Matching level: species

strain history

@refhistory
6238<- L. Tvrzová, Univ. Brno; 1B4
67770DSM 16007 <-- L. Tvrzová 1B4.

doi: 10.13145/bacdive13149.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas moraviensis
  • full scientific name: Pseudomonas moraviensis Tvrzová et al. 2006

@ref: 6238

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas moraviensis

full scientific name: Pseudomonas moraviensis Tvrzová et al. 2006

strain designation: 1B4

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 6238
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6238positivegrowth28mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6238---+----+++++-++-++-+
6238---+----+++++-++-++-+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6238soil besides highwayVranov, MoraviaCzech RepublicCZEEurope
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 6238
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6238
  • description: Pseudomonas moraviensis strain CCM 7280 16S ribosomal RNA gene, partial sequence
  • accession: AY970952
  • length: 1524
  • database: ena
  • NCBI tax ID: 321662

External links

@ref: 6238

culture collection no.: DSM 16007, CCM 7280, CIP 109459, JCM 14770, NCIMB 14567

straininfo link

  • @ref: 82357
  • straininfo: 286045

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17082407Pseudomonas moraviensis sp. nov. and Pseudomonas vranovensis sp. nov., soil bacteria isolated on nitroaromatic compounds, and emended description of Pseudomonas asplenii.Tvrzova L, Schumann P, Sproer C, Sedlacek I, Pacova Z, Sedo O, Zdrahal Z, Steffen M, Lang EInt J Syst Evol Microbiol10.1099/ijs.0.63988-02006Amino Acids/metabolism, Bacterial Typing Techniques, Carbohydrate Metabolism, Czech Republic, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pseudomonas/*classification/cytology/*isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, Ribotyping, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil MicrobiologyMetabolism
Phylogeny21642488Pseudomonas baetica sp. nov., a fish pathogen isolated from wedge sole, Dicologlossa cuneata (Moreau).Lopez JR, Dieguez AL, Doce A, De la Roca E, De la Herran R, Navas JI, Toranzo AE, Romalde JLInt J Syst Evol Microbiol10.1099/ijs.0.030601-02011Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fish Diseases/microbiology, Flatfishes/*microbiology, Genes, Bacterial, Liver/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pseudomonas/classification/genetics/*isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, SpainGenetics
Phylogeny27460204Pseudomonas kribbensis sp. nov., isolated from garden soils in Daejeon, Korea.Chang DH, Rhee MS, Kim JS, Lee Y, Park MY, Kim H, Lee SG, Kim BCAntonie Van Leeuwenhoek10.1007/s10482-016-0743-02016Base Composition, DNA, Bacterial, Gardens, Molecular Typing, Phylogeny, Pseudomonas/classification/genetics/*isolation & purification/ultrastructure, RNA, Bacterial, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil MicrobiologyEnzymology

Reference

@idauthorscataloguedoi/urltitle
6238Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16007)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16007
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
82357Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID286045.1StrainInfo: A central database for resolving microbial strain identifiers