Strain identifier

BacDive ID: 131485

Type strain: Yes

Species: Pseudonocardia nematodicida

Strain Designation: HA 11164

Strain history: CGMCC 4.7118 <-- H.-Q. Huang; Inst. of Trop. Biosci. & Biotechnol., China; HA11164.

NCBI tax ID(s): 1206997 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22712

BacDive-ID: 131485

DSM-Number: 45940

keywords: 16S sequence, Bacteria, mesophilic

description: Pseudonocardia nematodicida HA 11164 is a mesophilic bacterium that was isolated from mangrove soil.

NCBI tax id

  • NCBI tax id: 1206997
  • Matching level: species

strain history

@refhistory
22712<- H. Huang, Chinese Acad. Tropical Agricult. Sci., Haikou, China; HA 11164 <- H. Wei
67770CGMCC 4.7118 <-- H.-Q. Huang; Inst. of Trop. Biosci. & Biotechnol., China; HA11164.

doi: 10.13145/bacdive131485.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Pseudonocardia
  • species: Pseudonocardia nematodicida
  • full scientific name: Pseudonocardia nematodicida Liu et al. 2015

@ref: 22712

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Pseudonocardia

species: Pseudonocardia nematodicida

full scientific name: Pseudonocardia nematodicida Liu et al. 2015

strain designation: HA 11164

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 22712
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22712positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
22712mangrove soilHainan, Dongzhaigang National Nature Reserve (19°57'N, 110°35'E)ChinaCHNAsia19.95110.583
67770Mangrove sediment in Dongzhaigang Mangrove ForestHainanChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 22712
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
22712Metacarcinus magister isolate Coos-Bay-Sp0134 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrialJX097939222ena29965
67770Pseudonocardia nematodicida strain HA11164 16S ribosomal RNA gene, partial sequenceJX0679391481ena1206997

GC content

  • @ref: 22712
  • GC-content: 74.9
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22712

culture collection no.: DSM 45940, CGMCC 4.7118, JCM 31783

straininfo link

  • @ref: 89902
  • straininfo: 407966

literature

  • topic: Phylogeny
  • Pubmed-ID: 26115882
  • title: Pseudonocardia nematodicida sp. nov., isolated from mangrove sediment in Hainan, China.
  • authors: Liu M, Xing SS, Yuan WD, Wei H, Sun QG, Lin XZ, Huang HQ, Bao SX
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-015-0512-5
  • year: 2015
  • mesh: Actinobacteria/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Glycolipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysis, Wetlands
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22712Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45940Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45940)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
89902Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407966.1