Strain identifier
BacDive ID: 131485
Type strain:
Species: Pseudonocardia nematodicida
Strain Designation: HA 11164
Strain history: CGMCC 4.7118 <-- H.-Q. Huang; Inst. of Trop. Biosci. & Biotechnol., China; HA11164.
NCBI tax ID(s): 1206997 (species)
General
@ref: 22712
BacDive-ID: 131485
DSM-Number: 45940
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudonocardia nematodicida HA 11164 is a mesophilic bacterium that was isolated from mangrove soil.
NCBI tax id
- NCBI tax id: 1206997
- Matching level: species
strain history
@ref | history |
---|---|
22712 | <- H. Huang, Chinese Acad. Tropical Agricult. Sci., Haikou, China; HA 11164 <- H. Wei |
67770 | CGMCC 4.7118 <-- H.-Q. Huang; Inst. of Trop. Biosci. & Biotechnol., China; HA11164. |
doi: 10.13145/bacdive131485.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia nematodicida
- full scientific name: Pseudonocardia nematodicida Liu et al. 2015
@ref: 22712
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia nematodicida
full scientific name: Pseudonocardia nematodicida Liu et al. 2015
strain designation: HA 11164
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22712
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
22712 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
22712 | mangrove soil | Hainan, Dongzhaigang National Nature Reserve (19°57'N, 110°35'E) | China | CHN | Asia | 19.95 | 110.583 |
67770 | Mangrove sediment in Dongzhaigang Mangrove Forest | Hainan | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Mangrove |
#Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 22712
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
22712 | Metacarcinus magister isolate Coos-Bay-Sp0134 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial | JX097939 | 222 | ena | 29965 |
67770 | Pseudonocardia nematodicida strain HA11164 16S ribosomal RNA gene, partial sequence | JX067939 | 1481 | ena | 1206997 |
GC content
- @ref: 22712
- GC-content: 74.9
- method: high performance liquid chromatography (HPLC)
External links
@ref: 22712
culture collection no.: DSM 45940, CGMCC 4.7118, JCM 31783
straininfo link
- @ref: 89902
- straininfo: 407966
literature
- topic: Phylogeny
- Pubmed-ID: 26115882
- title: Pseudonocardia nematodicida sp. nov., isolated from mangrove sediment in Hainan, China.
- authors: Liu M, Xing SS, Yuan WD, Wei H, Sun QG, Lin XZ, Huang HQ, Bao SX
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-015-0512-5
- year: 2015
- mesh: Actinobacteria/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Glycolipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysis, Wetlands
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22712 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45940 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45940) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
89902 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407966.1 |