Strain identifier

BacDive ID: 13148

Type strain: Yes

Species: Pseudomonas taetrolens

Strain history: CIP <- 1989, NCIB <- ATCC <- W.E. Burns <- M. levine and D. Anderson: strain 1, Pseudomonas graveolens

NCBI tax ID(s): 47884 (species)

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General

@ref: 15555

BacDive-ID: 13148

DSM-Number: 21104

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Pseudomonas taetrolens DSM 21104 is an aerobe, mesophilic, motile bacterium that was isolated from musty egg.

NCBI tax id

  • NCBI tax id: 47884
  • Matching level: species

strain history

@refhistory
15555<- NRRL <- L. B. Lockwood, NRRL <- W. E. Burns <- M. Levine
67770IAM 1653 <-- IFO 3460 <-- Osaka Univ. of Educ., Japan <-- W. C. Haynes NRRL B-14.
123413CIP <- 1989, NCIB <- ATCC <- W.E. Burns <- M. levine and D. Anderson: strain 1, Pseudomonas graveolens

doi: 10.13145/bacdive13148.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas taetrolens
  • full scientific name: Pseudomonas taetrolens Haynes 1957 (Approved Lists 1980)

@ref: 15555

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas taetrolens

full scientific name: Pseudomonas taetrolens Haynes 1957

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.177
6948099.999negative
123413yesnegativerod-shaped

pigmentation

  • @ref: 123413
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15555TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
15555PSEUDOMONAS AGAR F (DSMZ Medium 907)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium907.pdf
15555Sucrose-Asparagine Medium (DSMZ Medium 1749)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1749.pdf
34242MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
123413CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
15555positivegrowth28mesophilic
34242positivegrowth25mesophilic
44234positivegrowth28mesophilic
67770positivegrowth30mesophilic
123413positivegrowth5-37
123413nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
44234aerobe
123413obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.997

halophily

@refsaltgrowthtested relationconcentration
123413NaClpositivegrowth0-6 %
123413NaClnogrowth8 %
123413NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
12341316947citrate+carbon source
1234134853esculin-hydrolysis
12341317632nitrate-reduction
12341316301nitrite-reduction
12341317632nitrate-respiration

antibiotic resistance

  • @ref: 123413
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12341335581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369arginine dihydrolase+3.5.3.6
123413oxidase+
123413beta-galactosidase-3.2.1.23
123413alcohol dehydrogenase+1.1.1.1
123413gelatinase+/-
123413amylase-
123413DNase-
123413caseinase-3.4.21.50
123413catalase+1.11.1.6
123413tween esterase-
123413lecithinase-
123413lipase-
123413lysine decarboxylase-4.1.1.18
123413ornithine decarboxylase-4.1.1.17
123413tryptophan deaminase-
123413urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123413-----+----++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
15555--+++---++++--+++/-++-+
15555--++----++++--++-++-+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123413+++-+--------------+++--+-+----+++---------++-++-+++++++++--+-+-+--+--+++++++++++++++--++++++++-+-+

Isolation, sampling and environmental information

isolation

@refsample type
15555musty egg
123413Food, Cause of mustiness in eggs

isolation source categories

Cat1Cat2Cat3
#Environmental#Microbial community
#Host Body Product#Urogenital tract#Egg

taxonmaps

  • @ref: 69479
  • File name: preview.99_442.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_368;99_442&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: D84027
  • Sequence Identity:
  • Total samples: 2942
  • soil counts: 460
  • aquatic counts: 830
  • animal counts: 1081
  • plant counts: 571

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
155551Risk group (German classification)
1234131Risk group (French classification)

Sequence information

16S sequences

  • @ref: 15555
  • description: Pseudomonas taetrolens 16S rRNA gene, complete sequence
  • accession: D84027
  • length: 1527
  • database: ena
  • NCBI tax ID: 47884

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas taetrolens NCTC10697GCA_900475285completencbi47884
66792Pseudomonas taetrolens NCTC8067GCA_900637735completencbi47884
66792Pseudomonas taetrolens strain DSM 2110447884.3wgspatric47884
66792Pseudomonas taetrolens strain NCTC1069747884.6completepatric47884
66792Pseudomonas taetrolens strain NCTC806747884.7completepatric47884
66792Pseudomonas taetrolens LMG 23362639762632draftimg47884
66792Pseudomonas taetrolens DSM 211042657245623draftimg47884
66792Pseudomonas taetrolens NCTC 106972808606717completeimg47884
67770Pseudomonas taetrolens DSM 21104GCA_001042915contigncbi47884
66792Pseudomonas taetrolens LMG 2336GCA_900104825contigncbi47884

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes83.033no
gram-positiveno98.249no
anaerobicno98.86yes
aerobicyes95.488yes
halophileno85.457no
spore-formingno96.559no
thermophileno99.688yes
glucose-utilyes90.75yes
motileyes88.195no
glucose-fermentno80.405yes

External links

@ref: 15555

culture collection no.: DSM 21104, ATCC 4683, CCM 1982, CIP 103299, JCM 20238, NCTC 10697, NRRL B-14, CCUG 560, LMG 2336, ATCC 17466, BCRC 11013, CCEB 381, CFBP 5592, IAM 1653, IFO 3460, KCTC 12501, NBRC 3460, NCIMB 9396, NCTC 8067, NRRL B-731, OUT 8256, VKM B-904

straininfo link

@refstraininfo
82355115877
82356276625

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism15160604Regulation of pyrimidine nucleotide formation in Pseudomonas taetrolens ATCC 4683.West TPMicrobiol Res10.1016/j.micres.2004.01.0072004Adenosine Diphosphate/metabolism, Adenosine Triphosphate/metabolism, Aspartate Carbamoyltransferase/metabolism, Dihydroorotase/metabolism, Dihydroorotate Dehydrogenase, Enzyme Inhibitors/metabolism, Gene Deletion, *Gene Expression Regulation, Bacterial, Genes, Bacterial, Guanosine Triphosphate/metabolism, Orotate Phosphoribosyltransferase/metabolism, Orotidine-5'-Phosphate Decarboxylase/genetics/metabolism, Oxidoreductases Acting on CH-CH Group Donors/metabolism, Pseudomonas/*genetics/*metabolism, Pyrimidine Nucleotides/*biosynthesis/genetics, Transcription, Genetic, Uridine Diphosphate/metabolism, Uridine Triphosphate/metabolismEnzymology
Enzymology20564572Detection and function of the intramolecular disulfide bond in arginine racemase: an enzyme with broad substrate specificity.Matsui D, Oikawa TChem Biodivers10.1002/cbdv.2009002582010Amino Acid Isomerases, Bacterial Proteins/chemistry/*metabolism, Disulfides/chemistry/*metabolism, Dithiothreitol/chemistry, Hydrogen-Ion Concentration, Kinetics, Molecular Sequence Data, Mutagenesis, Site-Directed, Pseudomonas/enzymology, Racemases and Epimerases/chemistry/*metabolism, Substrate Specificity, TemperatureMetabolism
Metabolism31667575Exploring encapsulation strategies as a protective mechanism to avoid amensalism in mixed populations of Pseudomonas taetrolens and Lactobacillus casei.Garcia C, Ranieri G, Rendueles M, Diaz MBioprocess Biosyst Eng10.1007/s00449-019-02204-82019*Cells, Immobilized/cytology/metabolism, Disaccharides/*biosynthesis, *Lactobacillus casei/cytology/metabolism, *Pseudomonas/cytology/metabolism
35207037Preparation of Edible Films with Lactobacillus plantarum and Lactobionic Acid Produced by Sweet Whey Fermentation.Saez-Orviz S, Marcet I, Rendueles M, Diaz MMembranes (Basel)10.3390/membranes120201152022

Reference

@idauthorscataloguedoi/urltitle
15555Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21104)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21104
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
34242Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15081
44234Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 560)https://www.ccug.se/strain?id=560
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82355Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID115877.1StrainInfo: A central database for resolving microbial strain identifiers
82356Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID276625.1StrainInfo: A central database for resolving microbial strain identifiers
123413Curators of the CIPCollection of Institut Pasteur (CIP 103299)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103299