Archive BacDiveID:10.13145/bacdive131476.20230509.8.1

Strain identifier

BacDive ID: 131476

Type strain:

Species: Nocardiopsis oceani

Strain Designation: 10A08A

Strain history: BCRC 16951 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; 10A08A.

NCBI tax ID(s): 1365492 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 22703

BacDive-ID: 131476

DSM-Number: 45931

keywords: 16S sequence, Bacteria, mesophilic

description: Nocardiopsis oceani 10A08A is a mesophilic bacterium that was isolated from marine sediment.

NCBI tax id

NCBI tax id: 1365492
Matching level: species

strain history

@ref	history
22703	<- W.-J. Li, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; 10A08A <- D.-F. Zhang
67770	BCRC 16951 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; 10A08A.

doi: 10.13145/bacdive131476.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Streptosporangiales
family: Nocardiopsidaceae
genus: Nocardiopsis
species: Nocardiopsis oceani
full scientific name: Nocardiopsis oceani Pan et al. 2015

@ref: 22703

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiopsaceae

genus: Nocardiopsis

species: Nocardiopsis oceani

full scientific name: Nocardiopsis oceani Pan et al. 2015

strain designation: 10A08A

type strain: yes

Morphology

multimedia

@ref: 22703
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45931.jpg
caption: Medium 514 28°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
22703	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	yes	https://mediadive.dsmz.de/medium/514	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
22703	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	yes	https://mediadive.dsmz.de/medium/535	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
22703	ISP2 MEDIUM (DSMZ Medium 987)	yes	https://mediadive.dsmz.de/medium/987	Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
22703	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

observation

@ref: 67770
observation: quinones: MK-9(H₆), MK-9(H₄), MK-10(H₆), MK-9(H₂)

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent	latitude	longitude
22703	marine sediment	South China Sea (13° 58.498' N 113° 2.353' E)	China	CHN	Asia	13.975	113.039
67770	Marine sediment, (13° 58.498' N 113° 2.353' E) at a depth of 2,460 m	South China Sea (13° 58.498' N 113° 2.353' E) at a depth of 2				13.975	113.039

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Safety information

risk assessment

@ref: 22703
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 22703
description: Nocardiopsis oceani strain 10A08A 16S ribosomal RNA gene, partial sequence
accession: KF270094
length: 1560
database: ena
NCBI tax ID: 1365492

GC content

@ref: 22703
GC-content: 70.9
method: high performance liquid chromatography (HPLC)

External links

@ref: 22703

culture collection no.: DSM 45931, BCRC 16951, CGMCC 47227, JCM 31824

straininfo link

@ref: 89893
straininfo: 404043

literature

topic: Phylogeny
Pubmed-ID: 26297579
title: Nocardiopsis oceani sp. nov. and Nocardiopsis nanhaiensis sp. nov., actinomycetes isolated from marine sediment of the South China Sea.
authors: Pan HQ, Zhang DF, Li L, Jiang Z, Cheng J, Zhang YG, Wang HF, Hu JC, Li WJ
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijsem.0.000425
year: 2015
mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/chemistry
topic2: Genetics

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
22703	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-45931	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45931)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
89893	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID404043.1