Strain identifier

BacDive ID: 13147

Type strain: Yes

Species: Pseudomonas resinovorans

Strain history: CIP <- 1961, B. Delaporte, Sci. Univ., Paris, France

NCBI tax ID(s): 1123020 (strain), 53412 (species)

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General

@ref: 15545

BacDive-ID: 13147

DSM-Number: 21078

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, motile

description: Pseudomonas resinovorans DSM 21078 is an obligate aerobe, mesophilic, motile bacterium that was isolated from Soil.

NCBI tax id

NCBI tax idMatching level
53412species
1123020strain

strain history

@refhistory
15545<- CIP <- B. Delaporte, Sci. Univ., Paris
376071961, B. Delaporte, Sci. Univ., Paris, France
122159CIP <- 1961, B. Delaporte, Sci. Univ., Paris, France

doi: 10.13145/bacdive13147.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas resinovorans
  • full scientific name: Pseudomonas resinovorans Delaporte et al. 1961 (Approved Lists 1980)

@ref: 15545

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas resinovorans

full scientific name: Pseudomonas resinovorans Delaporte et al. 1961

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.752
6948099.99negative
122159yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15545REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)yeshttps://mediadive.dsmz.de/medium/535bName: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water
37607MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
122159CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
122159CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
15545positivegrowth28mesophilic
37607positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122159
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no99
69480no99.887

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
12215917632nitrate-reduction
12215916301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12215935581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6
122159oxidase+
122159catalase+1.11.1.6
122159urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122159-+++++--+-++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
15545+--+----+------+-++++
15545---+----+------+-++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15545SoilVienneFranceFRAEurope
122159Environment, SoilVienneFranceFRAEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
155451Risk group (German classification)
1221591Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pseudomonas resinovorans partial 16S rRNA gene, type strain ICMP 13541TAJ3083141358ena53412
15545Pseudomonas resinovorans gene for 16S rRNA, strain: ATCC 14235AB0213731507ena53412
15545P.resinovorans 16S rRNA geneZ766681465ena53412

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas resinovorans DSM 21078GCA_000423545scaffoldncbi1123020
66792Pseudomonas resinovorans DSM 210781123020.3wgspatric1123020
66792Pseudomonas resinovorans DSM 210782524614671draftimg1123020

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
motileyes90.282no
flagellatedyes83.777no
gram-positiveno98.319no
anaerobicno98.299no
aerobicyes94.958no
halophileno80.372no
spore-formingno95.786no
thermophileno99.735yes
glucose-utilyes88.158yes
glucose-fermentno91.705yes

External links

@ref: 15545

culture collection no.: DSM 21078, ATCC 14235, CCUG 4439, CIP 61.9, LMG 2274, NCIMB 9280

straininfo link

  • @ref: 82354
  • straininfo: 389302

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism15892745Regulation of pyrimidine synthesis in Pseudomonas resinovorans.West TPLett Appl Microbiol10.1111/j.1472-765X.2005.01703.x2005Adenosine Triphosphate/pharmacology, Aspartate Carbamoyltransferase/metabolism, Enzyme Inhibitors/pharmacology, Enzyme Repression, *Gene Expression Regulation, Bacterial, Orotate Phosphoribosyltransferase/genetics/metabolism, Pseudomonas/genetics/*metabolism, Pyrimidines/*biosynthesis, Uridine Triphosphate/pharmacology
18613087Competition between two microbial populations in a sequencing fed-batch reactor: theory, experimental verification, and implications for waste treatment applications.Dikshitulu S, Baltzis BC, Lewandowski GA, Pavlou SBiotechnol Bioeng10.1002/bit.2604205131993
Phylogeny33174829Pseudomonas lalkuanensis sp. nov., isolated from a bacterial consortia of contaminated soil enriched for the remediation of e-waste.Thorat V, Kirdat K, Tiwarekar B, DaCosta E, Debbarma P, Shouche Y, Sathe S, Goel R, Lodha T, Yadav AInt J Syst Evol Microbiol10.1099/ijsem.0.0045592020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Electronic Waste, Fatty Acids/chemistry, Genes, Bacterial, India, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, *Soil PollutantsTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15545Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21078)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21078
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37607Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/9926
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82354Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389302.1StrainInfo: A central database for resolving microbial strain identifiers
122159Curators of the CIPCollection of Institut Pasteur (CIP 61.9)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2061.9