Strain identifier
BacDive ID: 131468
Type strain:
Species: Streptomyces gilvifuscus
Strain Designation: T113
Strain history: <- KACC; KACC 18248 <- J.S. Kim (Kyonggi Univ.); T113
NCBI tax ID(s): 1550617 (species)
General
@ref: 22695
BacDive-ID: 131468
DSM-Number: 102000
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Streptomyces gilvifuscus T113 is a mesophilic bacterium that was isolated from forest soil.
NCBI tax id
- NCBI tax id: 1550617
- Matching level: species
strain history
- @ref: 22695
- history: <- KACC; KACC 18248 <- J.S. Kim (Kyonggi Univ.); T113
doi: 10.13145/bacdive131468.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces gilvifuscus
- full scientific name: Streptomyces gilvifuscus Nguyen and Kim 2015
@ref: 22695
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces gilvifuscus
full scientific name: Streptomyces gilvifuscus Nguyen and Kim 2015
strain designation: T113
type strain: yes
Morphology
multimedia
- @ref: 22695
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102000.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
22695 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
22695 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 22695
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22695
- sample type: forest soil
- geographic location: Pyeongchang-gun
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
- latitude: 37.6
- longitude: 128.667
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Forest |
#Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 22695
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22695
- description: Streptomyces gilvifuscus strain T113 16S ribosomal RNA gene, partial sequence
- accession: KM229362
- length: 1441
- database: ena
- NCBI tax ID: 1550617
Genome sequences
- @ref: 66792
- description: Streptomyces gilvifuscus T113
- accession: GCA_028401765
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1550617
GC content
- @ref: 22695
- GC-content: 70.53
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 98.091 | no |
gram-positive | yes | 89.817 | no |
anaerobic | no | 99.069 | no |
aerobic | yes | 91.618 | no |
halophile | no | 94.789 | no |
spore-forming | yes | 94.355 | no |
glucose-ferment | no | 88.297 | no |
thermophile | no | 98.819 | no |
glucose-util | yes | 88.063 | no |
motile | no | 93.987 | no |
External links
@ref: 22695
culture collection no.: DSM 102000, KACC 18248, KEMB 9005-213, NBRC 110904
straininfo link
- @ref: 89887
- straininfo: 396600
literature
- topic: Phylogeny
- Pubmed-ID: 26297131
- title: Streptomyces gilvifuscus sp. nov., an actinomycete that produces antibacterial compounds isolated from soil.
- authors: Nguyen TM, Kim J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000447
- year: 2015
- mesh: Anti-Bacterial Agents, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Forests, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22695 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102000 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102000) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
89887 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396600.1 |