Strain identifier

BacDive ID: 131468

Type strain: Yes

Species: Streptomyces gilvifuscus

Strain Designation: T113

Strain history: <- KACC; KACC 18248 <- J.S. Kim (Kyonggi Univ.); T113

NCBI tax ID(s): 1550617 (species)

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General

@ref: 22695

BacDive-ID: 131468

DSM-Number: 102000

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces gilvifuscus T113 is a mesophilic bacterium that was isolated from forest soil.

NCBI tax id

  • NCBI tax id: 1550617
  • Matching level: species

strain history

  • @ref: 22695
  • history: <- KACC; KACC 18248 <- J.S. Kim (Kyonggi Univ.); T113

doi: 10.13145/bacdive131468.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces gilvifuscus
  • full scientific name: Streptomyces gilvifuscus Nguyen and Kim 2015

@ref: 22695

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces gilvifuscus

full scientific name: Streptomyces gilvifuscus Nguyen and Kim 2015

strain designation: T113

type strain: yes

Morphology

multimedia

  • @ref: 22695
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102000.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22695ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
22695GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 22695
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 22695
  • sample type: forest soil
  • geographic location: Pyeongchang-gun
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia
  • latitude: 37.6
  • longitude: 128.667

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 22695
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22695
  • description: Streptomyces gilvifuscus strain T113 16S ribosomal RNA gene, partial sequence
  • accession: KM229362
  • length: 1441
  • database: ena
  • NCBI tax ID: 1550617

Genome sequences

  • @ref: 66792
  • description: Streptomyces gilvifuscus T113
  • accession: GCA_028401765
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1550617

GC content

  • @ref: 22695
  • GC-content: 70.53

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno98.091no
gram-positiveyes89.817no
anaerobicno99.069no
aerobicyes91.618no
halophileno94.789no
spore-formingyes94.355no
glucose-fermentno88.297no
thermophileno98.819no
glucose-utilyes88.063no
motileno93.987no

External links

@ref: 22695

culture collection no.: DSM 102000, KACC 18248, KEMB 9005-213, NBRC 110904

straininfo link

  • @ref: 89887
  • straininfo: 396600

literature

  • topic: Phylogeny
  • Pubmed-ID: 26297131
  • title: Streptomyces gilvifuscus sp. nov., an actinomycete that produces antibacterial compounds isolated from soil.
  • authors: Nguyen TM, Kim J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000447
  • year: 2015
  • mesh: Anti-Bacterial Agents, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Forests, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22695Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102000Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102000)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
89887Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396600.1