Strain identifier

BacDive ID: 131464

Type strain: Yes

Species: Vogesella amnigena

Strain Designation: BRCR 80887, Npb-02

Strain history: <- LMG <- W.-M. Chen, National Kaohsiung Marine University, Taiwan; Npb-02

NCBI tax ID(s): 1507449 (species)

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General

@ref: 22691

BacDive-ID: 131464

DSM-Number: 100847

keywords: 16S sequence, Bacteria, mesophilic

description: Vogesella amnigena BRCR 80887 is a mesophilic bacterium that was isolated from freshwater from a river.

NCBI tax id

  • NCBI tax id: 1507449
  • Matching level: species

strain history

  • @ref: 22691
  • history: <- LMG <- W.-M. Chen, National Kaohsiung Marine University, Taiwan; Npb-02

doi: 10.13145/bacdive131464.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Chromobacteriaceae
  • genus: Vogesella
  • species: Vogesella amnigena
  • full scientific name: Vogesella amnigena Chen et al. 2015

@ref: 22691

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Chromobacteriaceae, not assigned to order

family: Chromobacteriaceae

genus: Vogesella

species: Vogesella amnigena

full scientific name: Vogesella amnigena Chen et al. 2015

strain designation: BRCR 80887, Npb-02

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 22691
  • name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830c
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 22691
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68369urease-3.5.1.5
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
22691++------+---+--+-+--+
22691++------+---+--+-+--+

Isolation, sampling and environmental information

isolation

  • @ref: 22691
  • sample type: freshwater from a river
  • geographic location: Beishi River near Pingtung (22° 22' 13'' N 120° 35' 31'' E)
  • country: Taiwan, Province of China
  • origin.country: TWN
  • continent: Asia
  • latitude: 22.3703
  • longitude: 120.592

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#River (Creek)

taxonmaps

  • @ref: 69479
  • File name: preview.99_74743.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15355;96_559;97_1733;98_52271;99_74743&stattab=map
  • Last taxonomy: Vogesella amnigena subclade
  • 16S sequence: LK056648
  • Sequence Identity:
  • Total samples: 1075
  • soil counts: 174
  • aquatic counts: 747
  • animal counts: 98
  • plant counts: 56

Safety information

risk assessment

  • @ref: 22691
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22691
  • description: Vogesella amnigena partial 16S rRNA gene, type strain Npb-02T
  • accession: LK056648
  • length: 1403
  • database: nuccore
  • NCBI tax ID: 1507449

GC content

  • @ref: 22691
  • GC-content: 64.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22691

culture collection no.: DSM 100847, KCTC 42195, LMG 28419

straininfo link

  • @ref: 89883
  • straininfo: 396454

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26198352Vogesella amnigena sp. nov., isolated from a freshwater river.Chen WM, Chen JC, Wang C, Huang CW, Sheu SYInt J Syst Evol Microbiol10.1099/ijsem.0.0004672015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hydroxybutyrates/chemistry, Molecular Sequence Data, Neisseriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Polyesters/chemistry, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Taiwan, Ubiquinone/chemistry, *Water MicrobiologyGenetics
Phylogeny26610704Vogesella facilis sp. nov., isolated from a freshwater river, and emended description of the genus Vogesella.Sheu SY, Chen YL, Young CC, Chen WMInt J Syst Evol Microbiol10.1099/ijsem.0.0007972015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hydroxybutyrates/metabolism, Neisseriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Polyesters/metabolism, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Taiwan, Ubiquinone/chemistry, *Water MicrobiologyMetabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22691Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100847Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100847)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89883Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396454.1