Strain identifier

BacDive ID: 131447

Type strain: Yes

Species: Mesobacillus stamsii

Strain Designation: BoGlc83

Strain history: B. Schink BoGlc83.

NCBI tax ID(s): 225347 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 22674

BacDive-ID: 131447

DSM-Number: 19598

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Mesobacillus stamsii BoGlc83 is an aerobe, mesophilic bacterium that was isolated from profundal anoxic lake sediment .

NCBI tax id

  • NCBI tax id: 225347
  • Matching level: species

strain history

@refhistory
22674<- N. Müller; BoGlc83 <- B. Schink
67770B. Schink BoGlc83.

doi: 10.13145/bacdive131447.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Mesobacillus
  • species: Mesobacillus stamsii
  • full scientific name: Mesobacillus stamsii (Müller et al. 2016) Patel and Gupta 2020

  • synonyms

    • @ref: 20215
    • synonym: Bacillus stamsii

@ref: 22674

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Mesobacillus

species: Mesobacillus stamsii

full scientific name: Mesobacillus stamsii (Müller et al. 2016) Patel and Gupta 2020

strain designation: BoGlc83

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22674CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
22674ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)yeshttps://mediadive.dsmz.de/medium/503Name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503; with strain-specific modifications) Composition: Na2CO3 1.49551 g/l NaCl 0.997008 g/l KCl 0.498505 g/l MgCl2 x 6 H2O 0.398803 g/l D-Glucose 0.358923 g/l Na2S x 9 H2O 0.299103 g/l NH4Cl 0.249252 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Nicotinic acid 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l Calcium pantothenate 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22674positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
22674aerobe
22674anaerobe

observation

  • @ref: 67770
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
22674profundal anoxic lake sediment (80 meter water depth)Lake Constance, KonstanzGermanyDEUEurope
67770Littoral sediment of Lake ConstanceKonstanzGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Sediment
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_6134.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_292;97_834;98_2226;99_6134&stattab=map
  • Last taxonomy: Mesobacillus
  • 16S sequence: AY189804
  • Sequence Identity:
  • Total samples: 47
  • soil counts: 33
  • aquatic counts: 8
  • animal counts: 1
  • plant counts: 5

Safety information

risk assessment

  • @ref: 22674
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22674
  • description: Bacillus stamsii strain BoGlc83 16S ribosomal RNA gene, partial sequence
  • accession: AY189804
  • length: 1488
  • database: ena
  • NCBI tax ID: 225347

Genome sequences

  • @ref: 66792
  • description: Mesobacillus stamsii DSM 19598
  • accession: 2926592867
  • assembly level: draft
  • database: img
  • NCBI tax ID: 225347

GC content

@refGC-contentmethod
2267442.8high performance liquid chromatography (HPLC)
6777042.8

External links

@ref: 22674

culture collection no.: DSM 19598, JCM 30025

straininfo link

  • @ref: 89869
  • straininfo: 405647

literature

  • topic: Phylogeny
  • Pubmed-ID: 26194116
  • title: Bacillus stamsii sp. nov., a facultatively anaerobic sugar degrader that is numerically dominant in freshwater lake sediment.
  • authors: Muller N, Scherag FD, Pester M, Schink B
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2015.06.004
  • year: 2015
  • mesh: Aerobiosis, Anaerobiosis, Bacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Cluster Analysis, DNA, Archaeal/chemistry/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fermentation, Geologic Sediments/*microbiology, Glucose/*metabolism, Lakes, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22674Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-19598Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19598)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89869Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405647.1