Strain identifier

BacDive ID: 131440

Type strain: Yes

Species: Aeromonas finlandensis

Strain Designation: 4287D

Strain history: <- M. J. Figueras, Departament de Ciencies Mediques Basiques, Universitat de Rovira i Virgili <- R. Beaz Hidalgo, Universitat de Rovira i Virgili <- K. Berg, University of Helsinki, Department of Food and Environmental Sciences; 4287D

NCBI tax ID(s): 1543375 (species)

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General

@ref: 22667

BacDive-ID: 131440

DSM-Number: 100828

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Aeromonas finlandensis 4287D is a mesophilic bacterium that was isolated from lake with elevated nitrogen levels in water.

NCBI tax id

  • NCBI tax id: 1543375
  • Matching level: species

strain history

  • @ref: 22667
  • history: <- M. J. Figueras, Departament de Ciencies Mediques Basiques, Universitat de Rovira i Virgili <- R. Beaz Hidalgo, Universitat de Rovira i Virgili <- K. Berg, University of Helsinki, Department of Food and Environmental Sciences; 4287D

doi: 10.13145/bacdive131440.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas finlandensis
  • full scientific name: Aeromonas finlandensis corrig. Beaz-Hidalgo et al. 2015

  • synonyms

    • @ref: 20215
    • synonym: Aeromonas finlandiensis

@ref: 22667

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas finlandensis

full scientific name: Aeromonas finlandensis Beaz-Hidalgo et al. 2015

strain designation: 4287D

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 22667
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 22667
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
22667+++-+---+-++++----+-+

Isolation, sampling and environmental information

isolation

  • @ref: 22667
  • sample type: lake with elevated nitrogen levels in water
  • geographic location: Hauho (municipality), Lake Pyhälampi
  • country: Finland
  • origin.country: FIN
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Lake (large)

Safety information

risk assessment

  • @ref: 22667
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22667
  • description: Aeromonas finlandiensis partial 16S rRNA gene, strain 4287D
  • accession: LM654283
  • length: 1405
  • database: ena
  • NCBI tax ID: 1543375

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas finlandensis 4287DGCA_000764645contigncbi1543375
66792Aeromonas finlandensis 4287D2903387694draftimg1543375

External links

@ref: 22667

culture collection no.: DSM 100828, CECT 8028, LMG 26709

straininfo link

  • @ref: 89865
  • straininfo: 378318

literature

  • topic: Phylogeny
  • Pubmed-ID: 25852023
  • title: Aeromonas aquatica sp. nov., Aeromonas finlandiensis sp. nov. and Aeromonas lacus sp. nov. isolated from Finnish waters associated with cyanobacterial blooms.
  • authors: Beaz-Hidalgo R, Latif-Eugenin F, Hossain MJ, Berg K, Niemi RM, Rapala J, Lyra C, Liles MR, Figueras MJ
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2015.02.005
  • year: 2015
  • mesh: Aeromonas/*classification/*isolation & purification, Cluster Analysis, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases, Finland, Genes, Bacterial/genetics, Lakes/*microbiology, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22667Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100828Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100828)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
89865Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID378318.1