Strain identifier

BacDive ID: 131439

Type strain: Yes

Species: Aeromonas aquatica

Strain Designation: AE235

Strain history: <- M. J. Figueras, Departament de Ciencies Mediques Basiques, Universitat de Rovira i Virgili <- R. Beaz Hidalgo, Universitat de Rovira i Virgili <- K. Berg, University of Helsinki, Department of Food and Environmental Sciences; AE235

NCBI tax ID(s): 558964 (species)

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General

@ref: 22666

BacDive-ID: 131439

DSM-Number: 100827

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Aeromonas aquatica AE235 is a mesophilic bacterium that was isolated from humic lake without faecal contamination, used as water source for drinking water.

NCBI tax id

  • NCBI tax id: 558964
  • Matching level: species

strain history

  • @ref: 22666
  • history: <- M. J. Figueras, Departament de Ciencies Mediques Basiques, Universitat de Rovira i Virgili <- R. Beaz Hidalgo, Universitat de Rovira i Virgili <- K. Berg, University of Helsinki, Department of Food and Environmental Sciences; AE235

doi: 10.13145/bacdive131439.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas aquatica
  • full scientific name: Aeromonas aquatica Beaz-Hidalgo et al. 2015

@ref: 22666

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas aquatica

full scientific name: Aeromonas aquatica Beaz-Hidalgo et al. 2015

strain designation: AE235

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 22666
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 22666
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction
6836830849L-arabinose-fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleyes
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6836935581indole+
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
22666++------+-+++--+--+-+

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
22666++++-++++-++++++-+--+

Isolation, sampling and environmental information

isolation

  • @ref: 22666
  • sample type: humic lake without faecal contamination, used as water source for drinking water
  • geographic location: Valkeala (municipality), Haukkajärvi
  • country: Finland
  • origin.country: FIN
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Aquatic#Lake (large)
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Condition#Acidic

taxonmaps

  • @ref: 69479
  • File name: preview.99_485.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_485&stattab=map
  • Last taxonomy: Aeromonas
  • 16S sequence: HG970952
  • Sequence Identity:
  • Total samples: 313
  • soil counts: 16
  • aquatic counts: 156
  • animal counts: 131
  • plant counts: 10

Safety information

risk assessment

  • @ref: 22666
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22666
  • description: Aeromonas aquatica partial 16S rRNA gene, type strain AE235T
  • accession: HG970952
  • length: 1405
  • database: ena
  • NCBI tax ID: 558964

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas aquatica AE235GCA_000764655contigncbi558964
66792Aeromonas aquatica AE2352903377991draftimg558964

External links

@ref: 22666

culture collection no.: DSM 100827, CECT 8025, LMG 26712

straininfo link

  • @ref: 89864
  • straininfo: 378323

literature

  • topic: Phylogeny
  • Pubmed-ID: 25852023
  • title: Aeromonas aquatica sp. nov., Aeromonas finlandiensis sp. nov. and Aeromonas lacus sp. nov. isolated from Finnish waters associated with cyanobacterial blooms.
  • authors: Beaz-Hidalgo R, Latif-Eugenin F, Hossain MJ, Berg K, Niemi RM, Rapala J, Lyra C, Liles MR, Figueras MJ
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2015.02.005
  • year: 2015
  • mesh: Aeromonas/*classification/*isolation & purification, Cluster Analysis, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases, Finland, Genes, Bacterial/genetics, Lakes/*microbiology, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22666Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100827Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100827)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89864Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID378323.1