Strain identifier
BacDive ID: 131437
Type strain: 
Species: Pseudidiomarina woesei
Strain Designation: W11
Strain history: S. K. Das W11.
NCBI tax ID(s): 1381080 (species)
version 8.1 (current version)
General
@ref: 22664
BacDive-ID: 131437
DSM-Number: 27808
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Pseudidiomarina woesei W11 is a mesophilic, motile bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 1381080
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22664 | <- S. Das, Inst. Life Sci., Bhubaneswar, India; W11 |
| 67770 | S. K. Das W11. |
doi: 10.13145/bacdive131437.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Idiomarinaceae
- genus: Pseudidiomarina
- species: Pseudidiomarina woesei
- full scientific name: Pseudidiomarina woesei (Poddar et al. 2015) Liu et al. 2019
synonyms
- @ref: 20215
- synonym: Idiomarina woesei
@ref: 22664
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Idiomarinaceae
genus: Pseudidiomarina
species: Pseudidiomarina woesei
full scientific name: Idiomarina woesei Poddar et al. 2015
strain designation: W11
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 95.909 | |
| 69480 | 99.987 | negative |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 22664 | seawater | Andaman Sea (11°59' 54'' N, 92° 58' 32'' E, depth, 3.5 m) | India | IND | Asia | 11.2333 | 93.1667 |
| 67770 | Seawater at a depth of 3.5 m from the Andaman Sea |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_8114.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_197;96_3743;97_4602;98_5910;99_8114&stattab=map
- Last taxonomy: Pseudidiomarina
- 16S sequence: KF487034
- Sequence Identity:
- Total samples: 1379
- soil counts: 92
- aquatic counts: 1081
- animal counts: 154
- plant counts: 52
Sequence information
16S sequences
- @ref: 22664
- description: Idiomarina woesei strain W11 16S ribosomal RNA gene, partial sequence
- accession: KF487034
- length: 1444
- database: ena
- NCBI tax ID: 1381080
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Idiomarina woesei strain DSM 27808 | 1381080.3 | wgs | patric | 1381080 |
| 66792 | Pseudidiomarina woesei DSM 27808 | 2617270856 | draft | img | 1381080 |
| 67770 | Pseudidiomarina woesei DSM 27808 | GCA_001517265 | scaffold | ncbi | 1381080 |
| 67770 | Pseudidiomarina woesei DSM 27808 | GCA_001418345 | scaffold | ncbi | 1381080 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 22664 | 41.2 | fluorimetric |
| 67770 | 47.8 | genome sequence analysis |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.837 | no |
| gram-positive | no | 99.179 | no |
| anaerobic | no | 98.24 | no |
| halophile | no | 54.936 | no |
| spore-forming | no | 96.819 | no |
| thermophile | no | 99.615 | no |
| glucose-util | yes | 73.087 | no |
| aerobic | yes | 91.257 | no |
| flagellated | no | 77.255 | no |
| glucose-ferment | no | 81.575 | no |
External links
@ref: 22664
culture collection no.: DSM 27808, JCM 19499, LMG 27903
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25078320 | Comparative analysis of 16S rRNA signature sequences of the genus Idiomarina and Idiomarina woesei sp. nov., a novel marine bacterium isolated from the Andaman Sea. | Poddar A, Lepcha RT, Mukherjee D, Bhattacharyya D, Das SK | Res Microbiol | 10.1016/j.resmic.2014.07.008 | 2014 | Aerobiosis, Alteromonadaceae/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Genetics |
| Genetics | 27516518 | Draft Genome Sequence of Idiomarina woesei Strain W11T (DSM 27808T) Isolated from the Andaman Sea. | Lepcha RT, Poddar A, Whitman WB, Das SK | Genome Announc | 10.1128/genomeA.00831-16 | 2016 | Phylogeny |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22664 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27808 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27808) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |