Strain identifier

BacDive ID: 131420

Type strain: Yes

Species: Novosphingobium gossypii

Strain Designation: JM-1396, JM1396

Strain history: CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain JM1396

NCBI tax ID(s): 1604774 (species)

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General

@ref: 22647

BacDive-ID: 131420

DSM-Number: 29615

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Novosphingobium gossypii JM-1396 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from healthy internal stem tissue of post-harvest cotton plant .

NCBI tax id

  • NCBI tax id: 1604774
  • Matching level: species

strain history

@refhistory
365302014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain JM1396
22647<- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; JM-1396 <- J. McInroy, Department of Entomology and Plant Pathology, Auburn University, Alabama, USA
119714CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain JM1396

doi: 10.13145/bacdive131420.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Novosphingobium
  • species: Novosphingobium gossypii
  • full scientific name: Novosphingobium gossypii Kämpfer et al. 2015

@ref: 22647

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Pseudomonadales

family: Erythrobacteraceae

genus: Novosphingobium

species: Novosphingobium gossypii

full scientific name: Novosphingobium gossypii Kämpfer et al. 2015

strain designation: JM-1396, JM1396

type strain: yes

Morphology

cell morphology

  • @ref: 119714
  • gram stain: negative
  • cell shape: rod-shaped

multimedia

  • @ref: 22647
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29615.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36530MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
22647TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yesName: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/535
119714CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
36530positivegrowth30mesophilic
22647positivegrowth28mesophilic

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
22647healthy internal stem tissue of post-harvest cotton plant (Gossypium hirsutum, cultivar DES-119)Gossypium hirsutumAlabama, Tallasee (Macon county), Plant Breeding Unit at the E. V. Smith Research CenterUSAUSANorth America
119714Environment, RhizosphereAlabamaUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Stem (Branch)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
226471Risk group (German classification)
1197141Risk group (French classification)

Sequence information

16S sequences

  • @ref: 22647
  • description: Novosphingobium gossypii strain JM-1396 16S ribosomal RNA gene, partial sequence
  • accession: KP657488
  • length: 1404
  • database: ena
  • NCBI tax ID: 1604774

Genome sequences

  • @ref: 66792
  • description: Novosphingobium gossypii DSM 29615
  • accession: 2829944697
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1604774

External links

@ref: 22647

culture collection no.: DSM 29615, CCM 8569, CIP 110884, LMG 28605

straininfo link

  • @ref: 89848
  • straininfo: 403629

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25985829Novosphingobium gossypii sp. nov., isolated from Gossypium hirsutum.Kampfer P, Martin K, McInroy JA, Glaeser SPInt J Syst Evol Microbiol10.1099/ijs.0.0003392015Alabama, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gossypium/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids, *Phylogeny, Pigmentation, Plant Stems/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/chemistry, Sphingomonadaceae/*classification/genetics/isolation & purification, Ubiquinone/chemistryGenetics
Phylogeny27902280Novosphingobium guangzhouense sp. nov., with the ability to degrade 1-methylphenanthrene.Sha S, Zhong J, Chen B, Lin L, Luan TInt J Syst Evol Microbiol10.1099/ijsem.0.0016692017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phenanthrenes/*metabolism, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/chemistry, Sphingomonadaceae/*classification/genetics/isolation & purification, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22647Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29615Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29615)
36530Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34439
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
89848Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403629.1
119714Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110884Collection of Institut Pasteur (CIP 110884)