Strain identifier

BacDive ID: 131416

Type strain: Yes

Species: Streptomyces mangrovi

Strain Designation: HA11110

Strain history: <- H. Huang, Chinese Acad. Tropical Agricult. Sci., Haikou, China; HA 11110 <- H. Wei

NCBI tax ID(s): 1206892 (species)

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General

@ref: 22643

BacDive-ID: 131416

DSM-Number: 42113

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces mangrovi HA11110 is a mesophilic bacterium that was isolated from mangrove soil.

NCBI tax id

  • NCBI tax id: 1206892
  • Matching level: species

strain history

  • @ref: 22643
  • history: <- H. Huang, Chinese Acad. Tropical Agricult. Sci., Haikou, China; HA 11110 <- H. Wei

doi: 10.13145/bacdive131416.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces mangrovi
  • full scientific name: Streptomyces mangrovi Wang et al. 2015

@ref: 22643

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces mangrovi

full scientific name: Streptomyces mangrovi Wang et al. 2015

strain designation: HA11110

type strain: yes

Morphology

multimedia

  • @ref: 22643
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42113.jpg
  • caption: Medium 514 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22643BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
22643GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
22643ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

  • @ref: 22643
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 22643
  • sample type: mangrove soil
  • geographic location: Hainan Province, Haikou City, Dongzhaigang National Nature Reserve (19° 57' N 110° 35' E)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 19.95
  • longitude: 110.583

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_32948.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_2143;97_2583;98_10732;99_32948&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: JX067937
  • Sequence Identity:
  • Total samples: 9
  • soil counts: 6
  • aquatic counts: 1
  • animal counts: 1
  • plant counts: 1

Safety information

risk assessment

  • @ref: 22643
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22643
  • description: Streptomyces mangrovi strain HA11110 16S ribosomal RNA gene, partial sequence
  • accession: JX067937
  • length: 1373
  • database: ena
  • NCBI tax ID: 1206892

GC content

  • @ref: 22643
  • GC-content: 72.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22643

culture collection no.: DSM 42113, CGMCC 4.7117

straininfo link

  • @ref: 89844
  • straininfo: 398249

literature

  • topic: Phylogeny
  • Pubmed-ID: 26297343
  • title: Streptomyces mangrovi sp. nov., an actinomycete from mangrove soil.
  • authors: Wang Y, Huang H, Yuan W, Wei H, Chen Y, Zhu J, Liu M, Zou X, Bao S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000382
  • year: 2015
  • mesh: China, DNA, Bacterial/genetics, Diaminopimelic Acid, Fatty Acids/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology, *Streptomyces/classification
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22643Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42113Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42113)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89844Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398249.1