Strain identifier

BacDive ID: 131399

Type strain: Yes

Species: Desmospora profundinema

Strain history: <- J. Li, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China; SCSIO 11154

NCBI tax ID(s): 1571184 (species)

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General

@ref: 22626

BacDive-ID: 131399

DSM-Number: 45903

keywords: genome sequence, 16S sequence, Bacteria, thermophilic

description: Desmospora profundinema DSM 45903 is a thermophilic bacterium that was isolated from deep-sea sediment.

NCBI tax id

  • NCBI tax id: 1571184
  • Matching level: species

strain history

  • @ref: 22626
  • history: <- J. Li, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China; SCSIO 11154

doi: 10.13145/bacdive131399.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Thermoactinomycetaceae
  • genus: Desmospora
  • species: Desmospora profundinema
  • full scientific name: Desmospora profundinema Zhang et al. 2015

@ref: 22626

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Thermoactinomycetaceae

genus: Desmospora

species: Desmospora profundinema

full scientific name: Desmospora profundinema Zhang et al. 2015

type strain: yes

Morphology

multimedia

  • @ref: 22626
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45903.jpg
  • caption: Medium 535a 40°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22626TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
22626TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)yeshttps://mediadive.dsmz.de/medium/535aName: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
22626BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 22626
  • growth: positive
  • type: growth
  • temperature: 40
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 22626
  • sample type: deep-sea sediment
  • geographic location: Indian Ocean (1°03.300' N 80° 03.099' E) at a depth of 4593 m
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 1.055
  • longitude: 80.0515

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_172165.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_358;96_64199;97_83257;98_112817;99_172165&stattab=map
  • Last taxonomy: Desmospora profundinema subclade
  • 16S sequence: KM368342
  • Sequence Identity:
  • Total samples: 148
  • soil counts: 76
  • aquatic counts: 24
  • animal counts: 36
  • plant counts: 12

Safety information

risk assessment

  • @ref: 22626
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22626
  • description: Desmospora profundinema strain SCSIO 11154 16S ribosomal RNA gene, partial sequence
  • accession: KM368342
  • length: 1511
  • database: ena
  • NCBI tax ID: 1571184

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desmospora profundinema DSM 459032901220101draftimg1571184
66792Desmospora profundinema DSM 459032784132156draftimg1571184

GC content

  • @ref: 22626
  • GC-content: 51.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22626

culture collection no.: DSM 45903, NBRC 109626, SCSIO 11154

straininfo link

  • @ref: 89832
  • straininfo: 398564

literature

  • topic: Phylogeny
  • Pubmed-ID: 25957053
  • title: Marinithermofilum abyssi gen. nov., sp. nov. and Desmospora profundinema sp. nov., isolated from a deep-sea sediment, and emended description of the genus DesmosporaYassin et al. 2009.
  • authors: Zhang Y, Li J, Tian X, Zhang S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000314
  • year: 2015
  • mesh: Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Indian Ocean, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22626Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45903Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45903)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89832Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398564.1