Strain identifier
BacDive ID: 131392
Type strain: 
Species: Acetoanaerobium pronyense
Strain Designation: ST07-YE
Strain history: A. Postec ST07-YE.
NCBI tax ID(s): 1482736 (species)
version 9.3 (current version)
General
@ref: 22619
BacDive-ID: 131392
DSM-Number: 27512
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Acetoanaerobium pronyense ST07-YE is an anaerobe, mesophilic bacterium that was isolated from carbonaceous chimney of an alkaline hydrothermal field, 16.5 m below sea level.
NCBI tax id
- NCBI tax id: 1482736
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22619 | <- A. Postec; Inst. Méditerranéen d'Océanologie, Marseille, France, ST07-YE |
| 67770 | A. Postec ST07-YE. |
doi: 10.13145/bacdive131392.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptostreptococcaceae
- genus: Acetoanaerobium
- species: Acetoanaerobium pronyense
- full scientific name: Acetoanaerobium pronyense Bes et al. 2015
@ref: 22619
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridia, not assigned to order
family: Peptostreptococcaceae
genus: Acetoanaerobium
species: Acetoanaerobium pronyense
full scientific name: Acetoanaerobium pronyense Bes et al. 2015
strain designation: ST07-YE
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22619
- name: PY + X MEDIUM (DSMZ Medium 104b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104b
- composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 22619 | positive | growth | 35 |
| 67770 | positive | growth | 35 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 22619 | anaerobe | |
| 125439 | anaerobe | 97.9 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 22619 | carbonaceous chimney of an alkaline hydrothermal field, 16.5 m below sea level | New Caledonia, Prony Bay | France | FRA | Europe | -22.3299 | 166.834 |
| 67770 | Carbonate chimney of the Prony Hydrothermal Field (PHF) | New Caledonia | French Overseas | FRA |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Alkaline | |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_12896.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15797;96_6627;97_7939;98_9747;99_12896&stattab=map
- Last taxonomy: Acetoanaerobium pronyense subclade
- 16S sequence: KJ174056
- Sequence Identity:
- Total samples: 6523
- soil counts: 673
- aquatic counts: 4065
- animal counts: 1556
- plant counts: 229
Safety information
risk assessment
- @ref: 22619
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22619
- description: Acetoanaerobium pronyense strain ST07-YE 16S ribosomal RNA gene, partial sequence
- accession: KJ174056
- length: 1384
- database: nuccore
- NCBI tax ID: 1482736
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetoanaerobium pronyense DSM 27512 | GCA_017874355 | contig | ncbi | 1482736 |
| 66792 | Acetoanaerobium pronyense strain DSM 27512 | 1482736.4 | wgs | patric | 1482736 |
| 66792 | Acetoanaerobium pronyense DSM 27512 | 2913505501 | draft | img | 1482736 |
GC content
- @ref: 22619
- GC-content: 32.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 61.067 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 88.687 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 61.979 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 92.568 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 89.595 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 74.126 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 50.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 62.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 69.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 97.9 |
External links
@ref: 22619
culture collection no.: DSM 27512, JCM 19400
straininfo link
- @ref: 89825
- straininfo: 404661
literature
- topic: Phylogeny
- Pubmed-ID: 25948619
- title: Acetoanaerobium pronyense sp. nov., an anaerobic alkaliphilic bacterium isolated from a carbonate chimney of the Prony Hydrothermal Field (New Caledonia).
- authors: Bes M, Merrouch M, Joseph M, Quemeneur M, Payri C, Pelletier B, Ollivier B, Fardeau ML, Erauso G, Postec A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000307
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, Carbonates, Clostridiales/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Hydrothermal Vents/*microbiology, Molecular Sequence Data, New Caledonia, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22619 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27512 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27512) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89825 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404661.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |