Strain identifier

BacDive ID: 131366

Type strain: Yes

Species: Maribacter vaceletii

Strain Designation: W13M1A

Strain history: <- J. Kennedy, University College Cork; W15M1A <- B. Flemer

NCBI tax ID(s): 1206816 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22593

BacDive-ID: 131366

DSM-Number: 25230

keywords: genome sequence, 16S sequence, Bacteria, psychrophilic, Gram-negative

description: Maribacter vaceletii W13M1A is a psychrophilic, Gram-negative bacterium that was isolated from marine sponge Suberites carnosus.

NCBI tax id

  • NCBI tax id: 1206816
  • Matching level: species

strain history

  • @ref: 22593
  • history: <- J. Kennedy, University College Cork; W15M1A <- B. Flemer

doi: 10.13145/bacdive131366.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Maribacter
  • species: Maribacter vaceletii
  • full scientific name: Maribacter vaceletii Jackson et al. 2015

@ref: 22593

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Maribacter

species: Maribacter vaceletii

full scientific name: Maribacter vaceletii Jackson et al. 2015

strain designation: W13M1A

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.993

colony morphology

  • @ref: 22593
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 22593
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 22593
  • growth: positive
  • type: growth
  • temperature: 20
  • range: psychrophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.995

Isolation, sampling and environmental information

isolation

  • @ref: 22593
  • sample type: marine sponge Suberites carnosus
  • host species: Suberites carnosus
  • geographic location: Co. Cork, Lough Hyne Marine Nature Reserve (51° 30' N 9° 18' W) at a depth of 15 m
  • country: Ireland
  • origin.country: IRL
  • continent: Europe
  • latitude: 51.5
  • longitude: -9.3

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Porifera (Sponges)

taxonmaps

  • @ref: 69479
  • File name: preview.99_94190.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_141;96_38700;97_49271;98_64737;99_94190&stattab=map
  • Last taxonomy: Maribacter vaceletii subclade
  • 16S sequence: JX050190
  • Sequence Identity:
  • Total samples: 348
  • soil counts: 1
  • aquatic counts: 342
  • animal counts: 4
  • plant counts: 1

Safety information

risk assessment

  • @ref: 22593
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22593
  • description: Maribacter vaceletii strain W13M1A 16S ribosomal RNA gene, partial sequence
  • accession: JX050190
  • length: 1332
  • database: ena
  • NCBI tax ID: 1206816

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Maribacter vaceletii DSM 25230GCA_003634105scaffoldncbi1206816
66792Maribacter vaceletii strain DSM 252301206816.3wgspatric1206816
66792Maribacter vaceletii DSM 252302734482098draftimg1206816

GC content

  • @ref: 22593
  • GC-content: 32.6
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno87.704no
flagellatedno94.311no
gram-positiveno98.108no
anaerobicno99.642no
aerobicyes90.045no
halophileno74.164no
spore-formingno96.534no
glucose-utilyes87.443no
thermophileno99.116no
glucose-fermentno90.446no

External links

@ref: 22593

culture collection no.: DSM 25230, NCIMB 14724

straininfo link

  • @ref: 89805
  • straininfo: 399708

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25833155Maribacter spongiicola sp. nov. and Maribacter vaceletii sp. nov., isolated from marine sponges, and emended description of the genus Maribacter.Jackson SA, Kennedy J, Morrissey JP, O'Gara F, Dobson ADWInt J Syst Evol Microbiol10.1099/ijs.0.0002242015Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Ireland, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny32416740Maribacter algarum sp. nov., a new member of the family Flavobacteriaceae isolated from the red alga Gelidium amansii.Zhang JY, Xia Y, Feng X, Mu DS, Du ZJInt J Syst Evol Microbiol10.1099/ijsem.0.0042202020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodophyta/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22593Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25230Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25230)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89805Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399708.1