Strain identifier
BacDive ID: 131366
Type strain:
Species: Maribacter vaceletii
Strain Designation: W13M1A
Strain history: <- J. Kennedy, University College Cork; W15M1A <- B. Flemer
NCBI tax ID(s): 1206816 (species)
General
@ref: 22593
BacDive-ID: 131366
DSM-Number: 25230
keywords: genome sequence, 16S sequence, Bacteria, psychrophilic, Gram-negative
description: Maribacter vaceletii W13M1A is a psychrophilic, Gram-negative bacterium that was isolated from marine sponge Suberites carnosus.
NCBI tax id
- NCBI tax id: 1206816
- Matching level: species
strain history
- @ref: 22593
- history: <- J. Kennedy, University College Cork; W15M1A <- B. Flemer
doi: 10.13145/bacdive131366.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Maribacter
- species: Maribacter vaceletii
- full scientific name: Maribacter vaceletii Jackson et al. 2015
@ref: 22593
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Maribacter
species: Maribacter vaceletii
full scientific name: Maribacter vaceletii Jackson et al. 2015
strain designation: W13M1A
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.993
colony morphology
- @ref: 22593
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 22593
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 22593
- growth: positive
- type: growth
- temperature: 20
- range: psychrophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.995 |
Isolation, sampling and environmental information
isolation
- @ref: 22593
- sample type: marine sponge Suberites carnosus
- host species: Suberites carnosus
- geographic location: Co. Cork, Lough Hyne Marine Nature Reserve (51° 30' N 9° 18' W) at a depth of 15 m
- country: Ireland
- origin.country: IRL
- continent: Europe
- latitude: 51.5
- longitude: -9.3
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Host | #Invertebrates (Other) | #Porifera (Sponges) |
taxonmaps
- @ref: 69479
- File name: preview.99_94190.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_141;96_38700;97_49271;98_64737;99_94190&stattab=map
- Last taxonomy: Maribacter vaceletii subclade
- 16S sequence: JX050190
- Sequence Identity:
- Total samples: 348
- soil counts: 1
- aquatic counts: 342
- animal counts: 4
- plant counts: 1
Safety information
risk assessment
- @ref: 22593
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22593
- description: Maribacter vaceletii strain W13M1A 16S ribosomal RNA gene, partial sequence
- accession: JX050190
- length: 1332
- database: ena
- NCBI tax ID: 1206816
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Maribacter vaceletii DSM 25230 | GCA_003634105 | scaffold | ncbi | 1206816 |
66792 | Maribacter vaceletii strain DSM 25230 | 1206816.3 | wgs | patric | 1206816 |
66792 | Maribacter vaceletii DSM 25230 | 2734482098 | draft | img | 1206816 |
GC content
- @ref: 22593
- GC-content: 32.6
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 87.704 | no |
flagellated | no | 94.311 | no |
gram-positive | no | 98.108 | no |
anaerobic | no | 99.642 | no |
aerobic | yes | 90.045 | no |
halophile | no | 74.164 | no |
spore-forming | no | 96.534 | no |
glucose-util | yes | 87.443 | no |
thermophile | no | 99.116 | no |
glucose-ferment | no | 90.446 | no |
External links
@ref: 22593
culture collection no.: DSM 25230, NCIMB 14724
straininfo link
- @ref: 89805
- straininfo: 399708
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 25833155 | Maribacter spongiicola sp. nov. and Maribacter vaceletii sp. nov., isolated from marine sponges, and emended description of the genus Maribacter. | Jackson SA, Kennedy J, Morrissey JP, O'Gara F, Dobson ADW | Int J Syst Evol Microbiol | 10.1099/ijs.0.000224 | 2015 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Ireland, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 32416740 | Maribacter algarum sp. nov., a new member of the family Flavobacteriaceae isolated from the red alga Gelidium amansii. | Zhang JY, Xia Y, Feng X, Mu DS, Du ZJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004220 | 2020 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodophyta/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
22593 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25230 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25230) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
89805 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399708.1 |