Strain identifier

BacDive ID: 131361

Type strain: Yes

Species: Paenibacillus qingshengii

Strain Designation: S1-9

Strain history: X. F. Sheng; Nanjing Agric. Univ., China; S1-9.

NCBI tax ID(s): 1585241 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22588

BacDive-ID: 131361

DSM-Number: 100926

keywords: 16S sequence, Bacteria, mesophilic

description: Paenibacillus qingshengii S1-9 is a mesophilic bacterium that was isolated from lead-zinc tailing.

NCBI tax id

  • NCBI tax id: 1585241
  • Matching level: species

strain history

@refhistory
22588<- JCM <- X. Sheng, Nanjing Agric. Univ., China; S1-9
67770X. F. Sheng; Nanjing Agric. Univ., China; S1-9.

doi: 10.13145/bacdive131361.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus qingshengii
  • full scientific name: Paenibacillus qingshengii Chen et al. 2015

@ref: 22588

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus qingshengii

full scientific name: Paenibacillus qingshengii Chen et al. 2015

strain designation: S1-9

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 22588
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
22588positivegrowth30
67770positivegrowth28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
22588lead-zinc tailingNanjing, Jiangsu ProvinceChinaCHNAsia
67770Lead-zinc tailing in NanjingJiangsu ProvinceChinaCHNAsia

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Other

taxonmaps

  • @ref: 69479
  • File name: preview.99_7409.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_3465;97_4250;98_5431;99_7409&stattab=map
  • Last taxonomy: Paenibacillus
  • 16S sequence: KP027419
  • Sequence Identity:
  • Total samples: 678
  • soil counts: 432
  • aquatic counts: 37
  • animal counts: 92
  • plant counts: 117

Safety information

risk assessment

  • @ref: 22588
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22588
  • description: Paenibacillus qingshengii strain S1-9 16S ribosomal RNA gene, partial sequence
  • accession: KP027419
  • length: 1477
  • database: nuccore
  • NCBI tax ID: 1585241

GC content

@refGC-contentmethod
2258849.9
6777049.9high performance liquid chromatography (HPLC)

External links

@ref: 22588

culture collection no.: DSM 100926, CCTCC AB 2014290, JCM 30613

straininfo link

  • @ref: 89800
  • straininfo: 402788

literature

  • topic: Phylogeny
  • Pubmed-ID: 25858246
  • title: Paenibacillus qingshengii sp. nov., isolated from a lead-zinc tailing.
  • authors: Chen L, Wang L, Sheng XF
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000232
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry, Zinc
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22588Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100926Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100926)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89800Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402788.1