Strain identifier
BacDive ID: 131361
Type strain:
Species: Paenibacillus qingshengii
Strain Designation: S1-9
Strain history: X. F. Sheng; Nanjing Agric. Univ., China; S1-9.
NCBI tax ID(s): 1585241 (species)
General
@ref: 22588
BacDive-ID: 131361
DSM-Number: 100926
keywords: 16S sequence, Bacteria, mesophilic
description: Paenibacillus qingshengii S1-9 is a mesophilic bacterium that was isolated from lead-zinc tailing.
NCBI tax id
- NCBI tax id: 1585241
- Matching level: species
strain history
@ref | history |
---|---|
22588 | <- JCM <- X. Sheng, Nanjing Agric. Univ., China; S1-9 |
67770 | X. F. Sheng; Nanjing Agric. Univ., China; S1-9. |
doi: 10.13145/bacdive131361.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus qingshengii
- full scientific name: Paenibacillus qingshengii Chen et al. 2015
@ref: 22588
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus qingshengii
full scientific name: Paenibacillus qingshengii Chen et al. 2015
strain designation: S1-9
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22588
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
@ref | growth | type | temperature |
---|---|---|---|
22588 | positive | growth | 30 |
67770 | positive | growth | 28 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
22588 | lead-zinc tailing | Nanjing, Jiangsu Province | China | CHN | Asia |
67770 | Lead-zinc tailing in Nanjing | Jiangsu Province | China | CHN | Asia |
isolation source categories
- Cat1: #Engineered
- Cat2: #Other
taxonmaps
- @ref: 69479
- File name: preview.99_7409.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_3465;97_4250;98_5431;99_7409&stattab=map
- Last taxonomy: Paenibacillus
- 16S sequence: KP027419
- Sequence Identity:
- Total samples: 678
- soil counts: 432
- aquatic counts: 37
- animal counts: 92
- plant counts: 117
Safety information
risk assessment
- @ref: 22588
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22588
- description: Paenibacillus qingshengii strain S1-9 16S ribosomal RNA gene, partial sequence
- accession: KP027419
- length: 1477
- database: nuccore
- NCBI tax ID: 1585241
GC content
@ref | GC-content | method |
---|---|---|
22588 | 49.9 | |
67770 | 49.9 | high performance liquid chromatography (HPLC) |
External links
@ref: 22588
culture collection no.: DSM 100926, CCTCC AB 2014290, JCM 30613
straininfo link
- @ref: 89800
- straininfo: 402788
literature
- topic: Phylogeny
- Pubmed-ID: 25858246
- title: Paenibacillus qingshengii sp. nov., isolated from a lead-zinc tailing.
- authors: Chen L, Wang L, Sheng XF
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000232
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry, Zinc
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22588 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100926 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100926) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
89800 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402788.1 |