Strain identifier
BacDive ID: 131354
Type strain: 
Species: Glutamicibacter endophyticus
Strain history: W.-J. Li EGI 6500322.
NCBI tax ID(s): 1522174 (species)
version 8.1 (current version)
General
@ref: 22581
BacDive-ID: 131354
DSM-Number: 28750
keywords: 16S sequence, Bacteria, mesophilic
description: Glutamicibacter endophyticus DSM 28750 is a mesophilic bacterium that was isolated from surface-sterilized root of a healthy plant of the halophyte Salsola affinis C. A. Mey.
NCBI tax id
- NCBI tax id: 1522174
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22581 | <- W.-J. Li, YIM; EGI 6500322 <- H. Wang, Xinjiang Inst. of Ecol. and Geography (XIEG), Chin. Acad. of Scs., Urumchi, China; EGI 6500322 |
| 67770 | W.-J. Li EGI 6500322. |
doi: 10.13145/bacdive131354.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Glutamicibacter
- species: Glutamicibacter endophyticus
- full scientific name: Glutamicibacter endophyticus (Wang et al. 2015) Busse and Schumann 2019
synonyms
- @ref: 20215
- synonym: Arthrobacter endophyticus
@ref: 22581
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Glutamicibacter
species: Glutamicibacter endophyticus
full scientific name: Glutamicibacter endophyticus (Wang et al. 2015) Busse and Schumann 2019
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22581
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22581 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 22581 | surface-sterilized root of a healthy plant of the halophyte Salsola affinis C. A. Mey | Salsola affinis | Xinjiang province, Urumqi city | China | CHN | Asia |
| 67770 | Surface-sterilized root of a halophyte Salsola affinis from Urumqi | Salsola affinis | Xinjiang Province, north-west China | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Shrub (Scrub) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
| #Host Body-Site | #Plant | #Sterilized plant part |
Safety information
risk assessment
- @ref: 22581
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22581
- description: Arthrobacter endophyticus strain EGI 6500322 16S ribosomal RNA gene, partial sequence
- accession: KM114214
- length: 1532
- database: ena
- NCBI tax ID: 1522174
GC content
| @ref | GC-content | method |
|---|---|---|
| 22581 | 62.0 | high performance liquid chromatography (HPLC) |
| 67770 | 62 | high performance liquid chromatography (HPLC) |
External links
@ref: 22581
culture collection no.: DSM 28750, JCM 30091, KCTC 29490, EGI 6500322
straininfo link
- @ref: 89794
- straininfo: 398201
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25858247 | Arthrobacter endophyticus sp. nov., an endophytic actinobacterium isolated from root of Salsola affinis C. A. Mey. | Wang HF, Li L, Zhang YG, Hozzein WN, Zhou XK, Liu WH, Duan YQ, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.000235 | 2015 | Arthrobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Salsola/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 30741625 | Reclassification of Arthrobacter endophyticus (Wang et al. 2015) as Glutamicibacter endophyticus comb. nov. | Busse HJ, Schumann P | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003268 | 2019 | Arthrobacter/*classification, Bacterial Typing Techniques, Cell Wall/chemistry, DNA, Bacterial/genetics, Micrococcaceae/*classification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22581 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28750 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28750) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 89794 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398201.1 |