Strain identifier

BacDive ID: 131353

Type strain: Yes

Species: Microbacterium enclense

Strain Designation: NIO-1002

Strain history: CIP <- 2015, S.G. Dastager, NCIM, Pune, India: strain NIO-1002

NCBI tax ID(s): 993073 (species)

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General

@ref: 22580

BacDive-ID: 131353

DSM-Number: 25125

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Microbacterium enclense NIO-1002 is a mesophilic bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 993073
  • Matching level: species

strain history

@refhistory
22580<- S. G. Dastager, National Institute of Oceanography, Mumbai, India; NIO-1002
119024CIP <- 2015, S.G. Dastager, NCIM, Pune, India: strain NIO-1002

doi: 10.13145/bacdive131353.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium enclense
  • full scientific name: Microbacterium enclense Mawlankar et al. 2015

@ref: 22580

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium enclense

full scientific name: Microbacterium enclense Mawlankar et al. 2015

strain designation: NIO-1002

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.73
69480100positive
119024nopositiverod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35085MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119024CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 35085
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.992

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation date
22580marine sedimentGoa Province, Chorao Island (15° 32' 34'' N 73° 55' 15'' E)IndiaINDAsia15.542873.9208
119024Environment, Marine sedimentChorao Island, GoaIndiaINDAsia2011-06-08

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_322.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_137;97_246;98_275;99_322&stattab=map
  • Last taxonomy: Microbacterium
  • 16S sequence: JF421612
  • Sequence Identity:
  • Total samples: 286
  • soil counts: 34
  • aquatic counts: 27
  • animal counts: 89
  • plant counts: 136

Safety information

risk assessment

  • @ref: 119024
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 22580
  • description: Microbacterium enclense strain NIO-1002 16S ribosomal RNA gene, partial sequence
  • accession: JF421612
  • length: 1414
  • database: ena
  • NCBI tax ID: 993073

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Microbacterium enclense NIO-1002GCA_900096885scaffoldncbi993073
66792Microbacterium enclense NIO-1002GCA_001456955scaffoldncbi993073
66792Microbacterium enclense strain NIO-1002993073.4wgspatric993073
66792Microbacterium enclense NIO-10022802429339draftimg993073

GC content

  • @ref: 22580
  • GC-content: 66.5
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno93.032no
flagellatedno97.723no
gram-positiveyes93.908no
anaerobicno99.662no
aerobicyes96.099no
halophileno85.221no
spore-formingno95.691no
glucose-fermentno91.173no
thermophileno98.991yes
glucose-utilyes85.554no

External links

@ref: 22580

culture collection no.: DSM 25125, CCTCC AB 2011120, NCIM 5454, CIP 110922

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25829331Microbacterium enclense sp. nov., isolated from sediment sample.Mawlankar RR, Mual P, Sonalkar VV, Thorat MN, Verma A, Srinivasan K, Dastager SGInt J Syst Evol Microbiol10.1099/ijs.0.0002212015Actinomycetales/*classification/genetics/isolation & purification, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, India, Islands, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/chemistryGenetics
Phylogeny28176143Microbacterium zeae sp. nov., an endophytic bacterium isolated from maize stem.Gao JL, Sun P, Wang XM, Lv FY, Sun JGAntonie Van Leeuwenhoek10.1007/s10482-017-0837-32017Actinobacteria/*classification/genetics/*isolation & purification, Aerobiosis, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Endophytes/*classification/genetics/*isolation & purification, Fatty Acids/analysis, Glycolipids/analysis, Humans, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Plant Stems/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysis, Zea mays/*microbiologyEnzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22580Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25125Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25125)
35085Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34529
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
119024Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110922Collection of Institut Pasteur (CIP 110922)