Strain identifier

BacDive ID: 131345

Type strain: Yes

Species: Catellatospora paridis

Strain Designation: NEAU-CL2

Strain history: CGMCC 4.7236 <-- C. Liu; Northeast Agric. Univ., China; NEAU-CL2.

NCBI tax ID(s): 1617086 (species)

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General

@ref: 22572

BacDive-ID: 131345

DSM-Number: 100519

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Catellatospora paridis NEAU-CL2 is a spore-forming, mesophilic bacterium that was isolated from rhizosphere soil of Paris polyphylla.

NCBI tax id

  • NCBI tax id: 1617086
  • Matching level: species

strain history

@refhistory
22572<- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-CL2
67770CGMCC 4.7236 <-- C. Liu; Northeast Agric. Univ., China; NEAU-CL2.

doi: 10.13145/bacdive131345.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Catellatospora
  • species: Catellatospora paridis
  • full scientific name: Catellatospora paridis Jia et al. 2016

@ref: 22572

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Catellatospora

species: Catellatospora paridis

full scientific name: Catellatospora paridis Jia et al. 2016

strain designation: NEAU-CL2

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no90.925
69480100positive

colony morphology

@refcolony colormedium used
69239Golden yellow (1004)suter with tyrosine
69239Ivory (1014)ISP 6
69239Maize yellow (1006)ISP 2
69239Sand yellow (1002), grey beige (1019)ISP 7
69239Signal yellow (1003)suter without tyrosine
69239Signal yellow (1003), daffodil yellow (1007)ISP 4
69239Signal yellow (1003), golden yellow (1004)ISP 3
69239Traffic yellow (1023)ISP 5

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69239noAerial myceliumISP 2
69239noAerial myceliumISP 3
69239noAerial myceliumISP 4
69239noAerial myceliumISP 5
69239noAerial myceliumISP 6
69239noAerial myceliumISP 7
69239noAerial myceliumsuter with tyrosine
69239noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69239yesMelanin
69239yessoluble pigmentSand yellow (1002), brown beige (1011)

multimedia

  • @ref: 22572
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_100519.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22572ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
22572GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22572positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes99.313

halophily

  • @ref: 69239
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H6), MK-8(H6)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6923922599arabinose+growth
6923962968cellulose-growth
6923928757fructose-growth
6923917234glucose+growth
6923917268inositol+/-growth
6923937684mannose+/-growth
6923916634raffinose-growth
6923926546rhamnose-growth
6923917992sucrose+growth
6923918222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382cystine arylamidase-3.4.11.3
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69239---+-+++--+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69239++/-+/--++/--+/-+++/-++-+++--

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentlatitudelongitude
22572rhizosphere soil of Paris polyphyllaParis polyphyllaHeilongjiang province, Harbin (45°3'N, 125°13'E)ChinaCHNAsia45.05125.217
67770Rhizosphere soil of Paris polyphylla from Heilongjiang ProvinceParis polyphyllanorth ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_19076.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_3745;97_11741;98_14429;99_19076&stattab=map
  • Last taxonomy: Catellatospora
  • 16S sequence: KP208837
  • Sequence Identity:
  • Total samples: 1372
  • soil counts: 939
  • aquatic counts: 89
  • animal counts: 57
  • plant counts: 287

Safety information

risk assessment

  • @ref: 22572
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22572
  • description: Catellatospora paridis strain NEAU-CL2 16S ribosomal RNA gene, partial sequence
  • accession: KP208837
  • length: 1509
  • database: ena
  • NCBI tax ID: 1617086

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Catellatospora paridis NEAU-CL2GCA_009720365scaffoldncbi1617086
66792Catellatospora paridis NEAU-CL22887478801draftimg1617086

GC content

@refGC-contentmethod
2257270.8thermal denaturation, midpoint method (Tm)
6777070.1-71.5thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno94.05no
flagellatedno97.563no
gram-positiveyes85.037no
anaerobicno99.319no
aerobicyes92.612no
halophileno93.912yes
spore-formingyes92.39no
glucose-utilyes87.714yes
glucose-fermentno90.248no
thermophileno99.084no

External links

@ref: 22572

culture collection no.: DSM 100519, CGMCC 4.7236, JCM 32489

straininfo link

  • @ref: 89786
  • straininfo: 408342

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26467683Catellatospora vulcania sp. nov. and Catellatospora paridis sp. nov., two novel actinobacteria isolated from volcanic sediment and the rhizosphere of Paris polyphylla.Jia F, Guo S, Shen Y, Gao M, Liu C, Zhou S, Li J, Guan X, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-015-0608-y2015Base Sequence, China, Cluster Analysis, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Micromonosporaceae/chemistry/*classification/genetics/*isolation & purification, Microscopy, Electron, Scanning, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Tracheophyta/*microbiologyTranscriptome
Phylogeny32375928Catellatospora sichuanensis sp. nov., a novel actinobacterium isolated from soil.Liu C, Guo Y, Li L, Wang X, Lin J, Wang X, Li J, Chu YInt J Syst Evol Microbiol10.1099/ijsem.0.0041752020Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Micromonosporaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22572Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100519Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100519)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69239Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%20100519.pdf
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89786Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408342.1