Archive BacDiveID:10.13145/bacdive131341.20230509.8.1

Strain identifier

BacDive ID: 131341

Type strain:

Species: Marinomonas mangrovi

Strain Designation: B20-1

Strain history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; B20-1

NCBI tax ID(s): 1397475 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 22568

BacDive-ID: 131341

DSM-Number: 28136

keywords: 16S sequence, Bacteria, mesophilic

description: Marinomonas mangrovi B20-1 is a mesophilic bacterium that was isolated from rhizosphere soil of mangrove forest.

NCBI tax id

NCBI tax id: 1397475
Matching level: species

strain history

@ref: 22568
history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; B20-1

doi: 10.13145/bacdive131341.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Oceanospirillales
family: Oceanospirillaceae
genus: Marinomonas
species: Marinomonas mangrovi
full scientific name: Marinomonas mangrovi Zhang and Margesin 2015

@ref: 22568

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Marinomonas

species: Marinomonas mangrovi

full scientific name: Marinomonas mangrovi Zhang and Margesin 2015

strain designation: B20-1

type strain: yes

Culture and growth conditions

culture medium

@ref: 22568
name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
growth: yes
link: https://mediadive.dsmz.de/medium/514
composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@ref: 22568
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 22568
sample type: rhizosphere soil of mangrove forest
geographic location: Hainan Province, Beigang Islands
country: China
origin.country: CHN
continent: Asia

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Host Body-Site	#Plant	#Rhizosphere

taxonmaps

@ref: 69479
File name: preview.99_22990.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_113;96_407;97_461;98_17333;99_22990&stattab=map
Last taxonomy: Marinomonas mangrovi subclade
16S sequence: KF560355
Sequence Identity:
Total samples: 411
soil counts: 17
aquatic counts: 364
animal counts: 11
plant counts: 19

Safety information

risk assessment

@ref: 22568
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 22568
description: Marinomonas mangrovi strain B20-1 16S ribosomal RNA gene, partial sequence
accession: KF560355
length: 1402
database: ena
NCBI tax ID: 1397475

GC content

@ref: 22568
GC-content: 46.6
method: thermal denaturation, midpoint method (Tm)

External links

@ref: 22568

culture collection no.: DSM 28136, CGMCC 1.12623, LMG 28077

straininfo link

@ref: 89782
straininfo: 397570

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	25713041	Marinomonas mangrovi sp. nov., isolated from mangrove sediment.	Zhang DC, Margesin R	Int J Syst Evol Microbiol	10.1099/ijs.0.000136	2015	Avicennia/microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, Marinomonas/classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry	Genetics
Phylogeny	35550236	Marinomonas lutimaris sp. nov., isolated from a tidal flat sediment of the East China Sea.	Gao Y, Wei Y, Wang P	Int J Syst Evol Microbiol	10.1099/ijsem.0.005368	2022	Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Marinomonas, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA	Transcriptome

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
22568	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-28136	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28136)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
89782	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID397570.1