Strain identifier
BacDive ID: 131339
Type strain: 
Species: Chelativorans intermedius
Strain Designation: CC-MHSW-5
Strain history: CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain CC-MHSW-5
NCBI tax ID(s): 515947 (species)
version 8.1 (current version)
General
@ref: 22566
BacDive-ID: 131339
DSM-Number: 29391
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped
description: Chelativorans intermedius CC-MHSW-5 is a mesophilic, Gram-negative, motile bacterium that was isolated from water of a coastal hot spring on volcanic island.
NCBI tax id
- NCBI tax id: 515947
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22566 | <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; CC-MHSW-5 <- C. C. Young, Dept. Soil and Environmental Sci., Natl. Chung Hsing Univ., Taichung, Taiwan |
| 120150 | CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain CC-MHSW-5 |
doi: 10.13145/bacdive131339.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Chelativorans
- species: Chelativorans intermedius
- full scientific name: Chelativorans intermedius Kämpfer et al. 2015
@ref: 22566
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Phyllobacteriaceae
genus: Chelativorans
species: Chelativorans intermedius
full scientific name: Chelativorans intermedius Kämpfer et al. 2015
strain designation: CC-MHSW-5
type strain: yes
Morphology
cell morphology
- @ref: 120150
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
multimedia
- @ref: 22566
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29391.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 41881 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
| 22566 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | https://mediadive.dsmz.de/medium/535 |
| 120150 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 41881 | positive | growth | 30 | mesophilic |
| 22566 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 22566 | water of a coastal hot spring (55 °C) on volcanic island | Green Island, a of the Pacific Ocean, off the east coast of Taiwan | Taiwan | TWN | Asia |
| 120150 | Unknown | Taiwan | TWN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Environmental | #Terrestrial | #Coast |
| #Environmental | #Terrestrial | #Volcanic |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 22566 | 1 | Risk group (German classification) |
| 120150 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 22566
- description: Chelativorans intermedius strain CC-MHSW-5 16S ribosomal RNA gene, partial sequence
- accession: EU564843
- length: 1480
- database: ena
- NCBI tax ID: 515947
Genome sequences
- @ref: 66792
- description: Chelativorans intermedius LMG 28482
- accession: GCA_025398255
- assembly level: contig
- database: ncbi
- NCBI tax ID: 515947
GC content
- @ref: 22566
- GC-content: 64.3
- method: fluorimetric
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 81.442 | no |
| flagellated | no | 70.769 | no |
| gram-positive | no | 97.569 | no |
| anaerobic | no | 98.056 | no |
| aerobic | yes | 86.445 | no |
| halophile | no | 56.969 | no |
| spore-forming | no | 95.954 | no |
| glucose-ferment | no | 89.994 | no |
| thermophile | no | 90.562 | yes |
| glucose-util | yes | 90.787 | no |
External links
@ref: 22566
culture collection no.: DSM 29391, CCM 8543, CIP 110825, LMG 28482
straininfo link
- @ref: 89780
- straininfo: 402166
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25724743 | Chelativorans intermedius sp. nov. and proposal to reclassify Thermovum composti as Chelativorans composti comb. nov. | Kampfer P, Arun AB, Busse HJ, Zhang ZL, Young CC, Glaeser SP | Int J Syst Evol Microbiol | 10.1099/ijs.0.000155 | 2015 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genotype, Hot Springs/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, Phyllobacteriaceae/*classification/genetics/isolation & purification, *Phylogeny, Polyamines/chemistry, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Sequence Analysis, DNA, Taiwan, Ubiquinone/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 28771124 | Notoacmeibacter marinus gen. nov., sp. nov., isolated from the gut of a limpet and proposal of Notoacmeibacteraceae fam. nov. in the order Rhizobiales of the class Alphaproteobacteria. | Huang Z, Guo F, Lai Q, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001951 | 2017 | Alphaproteobacteria/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Chin, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastropoda/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
| Pathogenicity | 29091816 | Chemical analysis of the Alphaproteobacterium strain MOLA1416 associated with the marine lichen Lichina pygmaea. | Parrot D, Intertaglia L, Jehan P, Grube M, Suzuki MT, Tomasi S | Phytochemistry | 10.1016/j.phytochem.2017.10.005 | 2017 | Alphaproteobacteria/*chemistry/isolation & purification/metabolism, Animals, Cell Line, Cell Proliferation/drug effects, Cell Survival/drug effects, Dose-Response Relationship, Drug, Humans, Lichens/metabolism/*microbiology, Melanoma, Experimental/*drug therapy/pathology, Mice, Molecular Structure, Oligopeptides/*chemistry/isolation & purification, Prodigiosin/*analogs & derivatives/chemistry/isolation & purification/pharmacology, Structure-Activity Relationship | Enzymology |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22566 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29391 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29391) | |
| 41881 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/30642 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89780 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402166.1 | |
| 120150 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110825 | Collection of Institut Pasteur (CIP 110825) |