Strain identifier

BacDive ID: 131322

Type strain: Yes

Species: Microbacterium panaciterrae

Strain history: <- YJ KIm, Kyunghee Univ.

NCBI tax ID(s): 985759 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22549

BacDive-ID: 131322

DSM-Number: 100921

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Microbacterium panaciterrae DSM 100921 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil of ginseng field.

NCBI tax id

  • NCBI tax id: 985759
  • Matching level: species

strain history

@refhistory
22549<- JCM; JCM 17839 <-D.C. Yang; Kyung Hee University, Republik of Korea; DCY56
67770D.-C. Yang DCY56.
67771<- YJ KIm, Kyunghee Univ.

doi: 10.13145/bacdive131322.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium panaciterrae
  • full scientific name: Microbacterium panaciterrae Nguyen et al. 2015

@ref: 22549

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium panaciterrae

full scientific name: Microbacterium panaciterrae Nguyen et al. 2015

type strain: yes

Morphology

cell morphology

  • @ref: 67771
  • gram stain: positive

Culture and growth conditions

culture medium

  • @ref: 22549
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22549positivegrowth28mesophilic
67770positivegrowth28mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

observation

  • @ref: 67770
  • observation: quinones: MK-12, MK-13

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
22549soil of ginseng fieldChungnam ProvinceRepublic of KoreaKORAsia
67770Soil from a ginseng field
67771From ginseng soilKyunghee Univ.Republic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 22549
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22549
  • description: Microbacterium panaciterrae strain DCY56 16S ribosomal RNA gene, partial sequence
  • accession: HQ844973
  • length: 1433
  • database: ena
  • NCBI tax ID: 985759

GC content

@refGC-contentmethod
2254968.5
6777068.5high performance liquid chromatography (HPLC)

External links

@ref: 22549

culture collection no.: DSM 100921, JCM 17839, KCTC 19884, DCY 56

straininfo link

  • @ref: 89763
  • straininfo: 397563

literature

  • topic: Phylogeny
  • Pubmed-ID: 25563915
  • title: Microbacterium panaciterrae sp. nov., isolated from the rhizosphere of ginseng.
  • authors: Nguyen NL, Kim YJ, Hoang VA, Min JW, Hwang KH, Yang DC
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000041
  • year: 2015
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Panax/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22549Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100921Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100921)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
89763Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397563.1