Strain identifier
BacDive ID: 131322
Type strain:
Species: Microbacterium panaciterrae
Strain history: <- YJ KIm, Kyunghee Univ.
NCBI tax ID(s): 985759 (species)
General
@ref: 22549
BacDive-ID: 131322
DSM-Number: 100921
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Microbacterium panaciterrae DSM 100921 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil of ginseng field.
NCBI tax id
- NCBI tax id: 985759
- Matching level: species
strain history
@ref | history |
---|---|
22549 | <- JCM; JCM 17839 <-D.C. Yang; Kyung Hee University, Republik of Korea; DCY56 |
67770 | D.-C. Yang DCY56. |
67771 | <- YJ KIm, Kyunghee Univ. |
doi: 10.13145/bacdive131322.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium panaciterrae
- full scientific name: Microbacterium panaciterrae Nguyen et al. 2015
@ref: 22549
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium panaciterrae
full scientific name: Microbacterium panaciterrae Nguyen et al. 2015
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
Culture and growth conditions
culture medium
- @ref: 22549
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
22549 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
observation
- @ref: 67770
- observation: quinones: MK-12, MK-13
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
22549 | soil of ginseng field | Chungnam Province | Republic of Korea | KOR | Asia |
67770 | Soil from a ginseng field | ||||
67771 | From ginseng soil | Kyunghee Univ. | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | #Field |
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
Safety information
risk assessment
- @ref: 22549
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22549
- description: Microbacterium panaciterrae strain DCY56 16S ribosomal RNA gene, partial sequence
- accession: HQ844973
- length: 1433
- database: ena
- NCBI tax ID: 985759
GC content
@ref | GC-content | method |
---|---|---|
22549 | 68.5 | |
67770 | 68.5 | high performance liquid chromatography (HPLC) |
External links
@ref: 22549
culture collection no.: DSM 100921, JCM 17839, KCTC 19884, DCY 56
straininfo link
- @ref: 89763
- straininfo: 397563
literature
- topic: Phylogeny
- Pubmed-ID: 25563915
- title: Microbacterium panaciterrae sp. nov., isolated from the rhizosphere of ginseng.
- authors: Nguyen NL, Kim YJ, Hoang VA, Min JW, Hwang KH, Yang DC
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000041
- year: 2015
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Panax/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22549 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100921 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100921) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
89763 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397563.1 |