Strain identifier

BacDive ID: 131317

Type strain: Yes

Species: Paraburkholderia susongensis

Strain Designation: L226

Strain history: X. F. Sheng; Nanjing Agric. Univ., China; L226.

NCBI tax ID(s): 1515439 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22544

BacDive-ID: 131317

DSM-Number: 100877

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Paraburkholderia susongensis L226 is a mesophilic, motile bacterium that was isolated from weathered rock surface .

NCBI tax id

  • NCBI tax id: 1515439
  • Matching level: species

strain history

@refhistory
22544<- JCM <- X. Sheng, Key Laboratory of Agricultural Environment Microbiology; PR China; L226
67770X. F. Sheng; Nanjing Agric. Univ., China; L226.

doi: 10.13145/bacdive131317.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Paraburkholderia
  • species: Paraburkholderia susongensis
  • full scientific name: Paraburkholderia susongensis (Gu et al. 2015) Dobritsa and Samadpour 2016
  • synonyms

    • @ref: 20215
    • synonym: Burkholderia susongensis

@ref: 22544

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Paraburkholderia

species: Paraburkholderia susongensis

full scientific name: Paraburkholderia susongensis (Gu et al. 2015) Dobritsa and Samadpour 2016

strain designation: L226

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes93.696
6948099.993negative

colony morphology

  • @ref: 22544
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 22544
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22544positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.96

enzymes

  • @ref: 22544
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
22544weathered rock surface (mica schist)Anhui Province, SusongChinaCHNAsia
67770Weathered surfaces of rock (mica schist) in SusongAnhui ProvinceChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Geologic

taxonmaps

  • @ref: 69479
  • File name: preview.99_2343.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_153;97_164;98_183;99_2343&stattab=map
  • Last taxonomy: Paraburkholderia
  • 16S sequence: KJ746438
  • Sequence Identity:
  • Total samples: 408
  • soil counts: 323
  • aquatic counts: 21
  • animal counts: 64

Safety information

risk assessment

  • @ref: 22544
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22544
  • description: Burkholderia susongensis strain L226 16S ribosomal RNA gene, partial sequence
  • accession: KJ746438
  • length: 1453
  • database: ena
  • NCBI tax ID: 1515439

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paraburkholderia susongensis strain LMG 295401515439.3wgspatric1515439
66792Paraburkholderia susongensis LMG 295402708742529draftimg1515439
67770Paraburkholderia susongensis LMG 29540GCA_900177725scaffoldncbi1515439

GC content

  • @ref: 22544
  • GC-content: 63.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.436no
gram-positiveno97.922no
anaerobicno98.815no
aerobicyes90.874no
halophileno91.154no
spore-formingno93.204no
thermophileno99.685yes
glucose-utilyes84.875no
flagellatedno79.486no
glucose-fermentno88.706no

External links

@ref: 22544

culture collection no.: DSM 100877, CCTCC AB 2014142, JCM 30231, LMG 29540

straininfo link

  • @ref: 89758
  • straininfo: 406031

literature

  • topic: Phylogeny
  • Pubmed-ID: 25575828
  • title: Burkholderia susongensis sp. nov., a mineral-weathering bacterium isolated from weathered rock surface.
  • authors: Gu JY, Zang SG, Sheng XF, He LY, Huang Z, Wang Q
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000059
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Composition, Burkholderia/*classification/genetics/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Minerals, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22544Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100877Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100877)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89758Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406031.1