Strain identifier
BacDive ID: 131317
Type strain:
Species: Paraburkholderia susongensis
Strain Designation: L226
Strain history: X. F. Sheng; Nanjing Agric. Univ., China; L226.
NCBI tax ID(s): 1515439 (species)
General
@ref: 22544
BacDive-ID: 131317
DSM-Number: 100877
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Paraburkholderia susongensis L226 is a mesophilic, motile bacterium that was isolated from weathered rock surface .
NCBI tax id
- NCBI tax id: 1515439
- Matching level: species
strain history
@ref | history |
---|---|
22544 | <- JCM <- X. Sheng, Key Laboratory of Agricultural Environment Microbiology; PR China; L226 |
67770 | X. F. Sheng; Nanjing Agric. Univ., China; L226. |
doi: 10.13145/bacdive131317.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Paraburkholderia
- species: Paraburkholderia susongensis
- full scientific name: Paraburkholderia susongensis (Gu et al. 2015) Dobritsa and Samadpour 2016
synonyms
- @ref: 20215
- synonym: Burkholderia susongensis
@ref: 22544
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Paraburkholderia
species: Paraburkholderia susongensis
full scientific name: Paraburkholderia susongensis (Gu et al. 2015) Dobritsa and Samadpour 2016
strain designation: L226
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 93.696 | |
69480 | 99.993 | negative |
colony morphology
- @ref: 22544
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 22544
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
22544 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.96 |
enzymes
- @ref: 22544
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
22544 | weathered rock surface (mica schist) | Anhui Province, Susong | China | CHN | Asia |
67770 | Weathered surfaces of rock (mica schist) in Susong | Anhui Province | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Geologic
taxonmaps
- @ref: 69479
- File name: preview.99_2343.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_153;97_164;98_183;99_2343&stattab=map
- Last taxonomy: Paraburkholderia
- 16S sequence: KJ746438
- Sequence Identity:
- Total samples: 408
- soil counts: 323
- aquatic counts: 21
- animal counts: 64
Safety information
risk assessment
- @ref: 22544
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22544
- description: Burkholderia susongensis strain L226 16S ribosomal RNA gene, partial sequence
- accession: KJ746438
- length: 1453
- database: ena
- NCBI tax ID: 1515439
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Paraburkholderia susongensis strain LMG 29540 | 1515439.3 | wgs | patric | 1515439 |
66792 | Paraburkholderia susongensis LMG 29540 | 2708742529 | draft | img | 1515439 |
67770 | Paraburkholderia susongensis LMG 29540 | GCA_900177725 | scaffold | ncbi | 1515439 |
GC content
- @ref: 22544
- GC-content: 63.5
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 88.436 | no |
gram-positive | no | 97.922 | no |
anaerobic | no | 98.815 | no |
aerobic | yes | 90.874 | no |
halophile | no | 91.154 | no |
spore-forming | no | 93.204 | no |
thermophile | no | 99.685 | yes |
glucose-util | yes | 84.875 | no |
flagellated | no | 79.486 | no |
glucose-ferment | no | 88.706 | no |
External links
@ref: 22544
culture collection no.: DSM 100877, CCTCC AB 2014142, JCM 30231, LMG 29540
straininfo link
- @ref: 89758
- straininfo: 406031
literature
- topic: Phylogeny
- Pubmed-ID: 25575828
- title: Burkholderia susongensis sp. nov., a mineral-weathering bacterium isolated from weathered rock surface.
- authors: Gu JY, Zang SG, Sheng XF, He LY, Huang Z, Wang Q
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000059
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, Burkholderia/*classification/genetics/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Minerals, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22544 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100877 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100877) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
89758 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406031.1 |