Strain identifier
BacDive ID: 131311
Type strain: 
Species: Roseimaritima ulvae
Strain history: <- O. M. Lage, Faculty Sci., Univ. Porto, Portugal; UC8
NCBI tax ID(s): 980254 (species)
version 8.1 (current version)
General
@ref: 22538
BacDive-ID: 131311
DSM-Number: 25454
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Roseimaritima ulvae DSM 25454 is a mesophilic bacterium that was isolated from epiphytic community of Ulva sp..
NCBI tax id
- NCBI tax id: 980254
- Matching level: species
strain history
- @ref: 22538
- history: <- O. M. Lage, Faculty Sci., Univ. Porto, Portugal; UC8
doi: 10.13145/bacdive131311.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/planctomycetota
- domain: Bacteria
- phylum: Planctomycetota
- class: Planctomycetia
- order: Pirellulales
- family: Pirellulaceae
- genus: Roseimaritima
- species: Roseimaritima ulvae
- full scientific name: Roseimaritima ulvae Bondoso et al. 2016
@ref: 22538
domain: Bacteria
phylum: Planctomycetes
class: Planctomycetia
order: Planctomycetales
family: Pirellulaceae
genus: Roseimaritima
species: Roseimaritima ulvae
full scientific name: Roseimaritima ulvae Bondoso et al. 2016
type strain: yes
Morphology
colony morphology
- @ref: 22538
- incubation period: >14 days
Culture and growth conditions
culture medium
- @ref: 22538
- name: M13 VERRUCOMICROBIUM MEDIUM (DSMZ Medium 607)
- growth: yes
- link: https://mediadive.dsmz.de/medium/607
- composition: Name: M13 VERRUCOMICROBIUM MEDIUM (DSMZ Medium 607) Composition: NaCl 5.86925 g/l MgCl2 x 6 H2O 1.24525 g/l Na2SO4 0.97925 g/l MgSO4 x 7 H2O 0.594 g/l CaCl2 0.2755 g/l Glucose 0.25 g/l Peptone 0.25 g/l Yeast extract 0.25 g/l Nitrilotriacetic acid 0.2 g/l KCl 0.166 g/l CaCl2 x 2 H2O 0.0667 g/l NaHCO3 0.048 g/l H3BO3 0.0065 g/l SrCl2 0.006 g/l KBr 0.0015 g/l ZnSO4 x 7 H2O 0.001095 g/l NaF 0.00075 g/l FeSO4 x 7 H2O 0.0005 g/l Na-EDTA 0.00025 g/l (NH4)6Mo7O24 x 4 H2O 0.000185 g/l MnSO4 x H2O 0.000154 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Nicotinamide 5e-05 g/l Riboflavin 5e-05 g/l Calcium pantothenate 5e-05 g/l CuSO4 x 5 H2O 3.92e-05 g/l Co(NO3)2 x 6 H2O 2.48e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l Vitamin B12 1e-06 g/l Tris-HCl buffer Distilled water
culture temp
- @ref: 22538
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22538
- sample type: epiphytic community of Ulva sp.
- host species: Ulva
- geographic location: Carreço, Viana do Castelo
- country: Portugal
- origin.country: PRT
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Algae | #Green algae |
| #Host | #Other | #Epibiont |
taxonmaps
- @ref: 69479
- File name: preview.99_260.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_75;96_183;97_199;98_222;99_260&stattab=map
- Last taxonomy: Roseimaritima ulvae subclade
- 16S sequence: HQ845508
- Sequence Identity:
- Total samples: 1480
- soil counts: 356
- aquatic counts: 1005
- animal counts: 104
- plant counts: 15
Safety information
risk assessment
- @ref: 22538
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22538
- description: Roseimaritima ulvae strain UC8 16S ribosomal RNA gene, partial sequence
- accession: HQ845508
- length: 1449
- database: ena
- NCBI tax ID: 980254
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Roseimaritima ulvae DSM 25454 | GCA_001642915 | contig | ncbi | 980254 |
| 66792 | Roseimaritima ulvae strain DSM 25454 | 980254.6 | wgs | patric | 980254 |
| 66792 | Roseimaritima ulvae strain UC8 | 980254.9 | complete | patric | 980254 |
| 66792 | Roseimaritima ulvae DSM 25454 | 2690315921 | draft | img | 980254 |
GC content
- @ref: 22538
- GC-content: 57.0
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 85.388 | no |
| flagellated | no | 72.456 | no |
| gram-positive | no | 96.244 | no |
| anaerobic | no | 97.438 | no |
| halophile | no | 68.124 | no |
| spore-forming | no | 85.646 | no |
| thermophile | no | 98.979 | yes |
| glucose-util | yes | 89.831 | no |
| aerobic | yes | 89.514 | no |
| glucose-ferment | no | 83.402 | no |
External links
@ref: 22538
culture collection no.: DSM 25454, LMG 27778, UC 8
straininfo link
- @ref: 89752
- straininfo: 399207
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25487949 | Roseimaritima ulvae gen. nov., sp. nov. and Rubripirellula obstinata gen. nov., sp. nov. two novel planctomycetes isolated from the epiphytic community of macroalgae. | Bondoso J, Albuquerque L, Nobre MF, Lobo-da-Cunha A, da Costa MS, Lage OM | Syst Appl Microbiol | 10.1016/j.syapm.2014.10.004 | 2014 | Bacterial Proteins/metabolism, Base Composition, DNA, Bacterial/genetics, Molecular Sequence Data, Molecular Typing, Phylogeny, Planctomycetales/enzymology/genetics/*isolation & purification/ultrastructure, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Seaweed/enzymology/genetics/*isolation & purification/ultrastructure, Sequence Analysis, DNA, Water Microbiology | Enzymology |
| 27570520 | Planctomycetes as Novel Source of Bioactive Molecules. | Graca AP, Calisto R, Lage OM | Front Microbiol | 10.3389/fmicb.2016.01241 | 2016 | |||
| Genetics | 29074368 | Planctomycetes attached to algal surfaces: Insight into their genomes. | Faria M, Bordin N, Kizina J, Harder J, Devos D, Lage OM | Genomics | 10.1016/j.ygeno.2017.10.007 | 2017 | Bacterial Outer Membrane Proteins/genetics, Biofilms, Chlorophyta/microbiology, *Genome, Bacterial, Lipopolysaccharides/biosynthesis/genetics, Phaeophyta/microbiology, Planctomycetales/*genetics/pathogenicity/physiology, Proteoglycans/genetics | |
| Phylogeny | 32129737 | Roseimaritima sediminicola sp. nov., a new member of Planctomycetaceae isolated from Chilika lagoon. | Kumar D, Gaurav K, U J, G D, Ch S, Ch V R | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004076 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Lakes/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, Planctomycetales/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, *Saline Waters, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22538 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25454 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25454) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89752 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399207.1 |