Strain identifier

BacDive ID: 131310

Type strain: Yes

Species: Paraburkholderia monticola

Strain Designation: JC2948

Strain history: J. Chun JC2948.

NCBI tax ID(s): 1399968 (species)

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General

@ref: 22537

BacDive-ID: 131310

DSM-Number: 100849

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Paraburkholderia monticola JC2948 is a mesophilic bacterium that was isolated from soil sample.

NCBI tax id

  • NCBI tax id: 1399968
  • Matching level: species

strain history

@refhistory
22537<- JCM <- J. Chun, Seoul Natl. Univ., Republic of Korea; JC2948
67770J. Chun JC2948.

doi: 10.13145/bacdive131310.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Paraburkholderia
  • species: Paraburkholderia monticola
  • full scientific name: Paraburkholderia monticola (Baek et al. 2015) Dobritsa and Samadpour 2016

  • synonyms

    • @ref: 20215
    • synonym: Burkholderia monticola

@ref: 22537

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Paraburkholderia

species: Paraburkholderia monticola

full scientific name: Paraburkholderia monticola (Baek et al. 2015) Dobritsa and Samadpour 2016

strain designation: JC2948

type strain: yes

Morphology

colony morphology

  • @ref: 22537
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 22537
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22537positivegrowth30mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

enzymes

@refvalueactivityec
22537catalase+1.11.1.6
22537cytochrome-c oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
22537soil sampleGwanak MountainRepublic of KoreaKORAsia
67770Soil from Gwanak MountainSeoulRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_7527.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_153;97_164;98_183;99_7527&stattab=map
  • Last taxonomy: Paraburkholderia monticola
  • 16S sequence: KF155692
  • Sequence Identity:
  • Total samples: 1368
  • soil counts: 1153
  • aquatic counts: 58
  • animal counts: 86
  • plant counts: 71

Safety information

risk assessment

  • @ref: 22537
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22537
  • description: Burkholderia monticola strain JC2948 16S ribosomal RNA gene, partial sequence
  • accession: KF155692
  • length: 1463
  • database: ena
  • NCBI tax ID: 1399968

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paraburkholderia monticola JC29482775507265completeimg1399968
67770Paraburkholderia monticola JC2948GCA_001580545contigncbi1399968

GC content

  • @ref: 22537
  • GC-content: 63.8

External links

@ref: 22537

culture collection no.: DSM 100849, JCM 19904, KACC 17924

straininfo link

  • @ref: 89751
  • straininfo: 396503

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25472981Burkholderia monticola sp. nov., isolated from mountain soil.Baek I, Seo B, Lee I, Yi H, Chun JInt J Syst Evol Microbiol10.1099/ijs.0.066001-02014Bacterial Typing Techniques, Base Composition, Burkholderia/*classification/genetics/isolation & purification, Cardiolipins/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryGenetics
Phylogeny34694983Description of antibiotic-producing novel bacteria Paraburkholderia antibiotica sp. nov. and Paraburkholderia polaris sp. nov.Dahal RH, Kim J, Chaudhary DK, Kim DU, Kim JInt J Syst Evol Microbiol10.1099/ijsem.0.0050602021*Anti-Bacterial Agents/biosynthesis, Arctic Regions, Bacterial Typing Techniques, Base Composition, *Burkholderiaceae/classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Forests, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22537Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100849Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100849)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89751Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396503.1