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Strain identifier

BacDive ID: 131309

Type strain: Yes

Species: Bisgaardia miroungae

Strain Designation: Wildatric

Strain history: <- M.J. Hansen, Fac. Health and Medical Scs., Univ. Copenhagen, Frederiksberg, Denmark; Wildatric

NCBI tax ID(s): 1460875 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22536

BacDive-ID: 131309

DSM-Number: 28141

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Bisgaardia miroungae Wildatric is a microaerophile, mesophilic bacterium that was isolated from oral cavity of a healthy northern elephant seal.

NCBI tax id

  • NCBI tax id: 1460875
  • Matching level: species

strain history: <- M.J. Hansen, Fac. Health and Medical Scs., Univ. Copenhagen, Frederiksberg, Denmark; Wildatric

doi: 10.13145/bacdive131309.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Bisgaardia
  • species: Bisgaardia miroungae
  • full scientific name: Bisgaardia miroungae Hansen et al. 2015

@ref: 22536

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Bisgaardia

species: Bisgaardia miroungae

full scientific name: Bisgaardia miroungae Hansen et al. 2015

strain designation: Wildatric

type strain: yes

Morphology

colony morphology

@reftype of hemolysisincubation period
22536gamma1-2 days
632051 day

Culture and growth conditions

culture medium

  • @ref: 22536
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
63205positivegrowth37mesophilic
22536positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63205
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116199urea-hydrolysis
6838116443D-tagatose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
683816731melezitose-builds acid from
6838128053melibiose-builds acid from
6838117306maltose+builds acid from
6838127941pullulan-builds acid from
6838128087glycogen-builds acid from
68381606565hippurate-hydrolysis
6838140585alpha-cyclodextrin-builds acid from
6838118333D-arabitol-builds acid from
6838130849L-arabinose-builds acid from
6838117992sucrose-builds acid from
6838116634raffinose-builds acid from
6838127082trehalose-builds acid from
6838117716lactose-builds acid from
6838130911sorbitol-builds acid from
6838116899D-mannitol-builds acid from
6838129016arginine-hydrolysis
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6838115688acetoinno
6836935581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6836935581indole-

enzymes

@refvalueactivityec
22536catalase+1.11.1.6
22536cytochrome-c oxidase+1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
22536--------------------

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
22536-----++/-------------------+------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
22536oral cavity of a healthy northern elephant sealCalifornia, Sausalito, The Marine Mammal CenterUSAUSANorth America
63205Oral cavity of wild northern sealCalifornia,The Marine mammal CenterUSAUSANorth America2011-06-01

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Aquatic mammal
#Host Body-Site#Oral cavity and airways

Sequence information

16S sequences

  • @ref: 22536
  • description: Bisgaardia miroungae strain Wildatric 16S ribosomal RNA gene, partial sequence
  • accession: KF871284
  • length: 1253
  • database: ena
  • NCBI tax ID: 1460875

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas helleri DSM 28141GCA_001043065contigncbi1608996
66792Pseudomonas helleri strain DSM 281411608996.6wgspatric1608996
66792Klebsiella pneumoniae Ni9GCA_020404605contigpatric573

External links

@ref: 22536

culture collection no.: DSM 28141, CCUG 65148

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/902294

literature

  • topic: Phylogeny
  • Pubmed-ID: 25368140
  • title: Bisgaardia miroungae sp. nov., a new member of the family Pasteurellaceae isolated from the oral cavity of northern elephant seals (Mirounga angustirostris), and emended description of the genus Bisgaardia.
  • authors: Hansen MJ, Bertelsen MF, Christensen H, Bojesen AM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.065060-0
  • year: 2014
  • mesh: Animals, Bacterial Typing Techniques, California, DNA, Bacterial/genetics, Genes, Bacterial, Genotype, Molecular Sequence Data, Mouth/*microbiology, Pasteurellaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seals, Earless/*microbiology, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
22536Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28141Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28141)
63205Curators of the CCUGhttps://www.ccug.se/strain?id=65148Culture Collection University of Gothenburg (CCUG) (CCUG 65148)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68381Automatically annotated from API rID32STR