Strain identifier

BacDive ID: 131309

Type strain: Yes

Species: Bisgaardia miroungae

Strain Designation: Wildatric

Strain history: <- M.J. Hansen, Fac. Health and Medical Scs., Univ. Copenhagen, Frederiksberg, Denmark; Wildatric

NCBI tax ID(s): 1460875 (species)

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General

@ref: 22536

BacDive-ID: 131309

DSM-Number: 28141

keywords: 16S sequence, Bacteria, microaerophile, mesophilic

description: Bisgaardia miroungae Wildatric is a microaerophile, mesophilic bacterium that was isolated from oral cavity of a healthy northern elephant seal.

NCBI tax id

  • NCBI tax id: 1460875
  • Matching level: species

strain history

  • @ref: 22536
  • history: <- M.J. Hansen, Fac. Health and Medical Scs., Univ. Copenhagen, Frederiksberg, Denmark; Wildatric

doi: 10.13145/bacdive131309.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Bisgaardia
  • species: Bisgaardia miroungae
  • full scientific name: Bisgaardia miroungae Hansen et al. 2015

@ref: 22536

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Bisgaardia

species: Bisgaardia miroungae

full scientific name: Bisgaardia miroungae Hansen et al. 2015

strain designation: Wildatric

type strain: yes

Morphology

colony morphology

@reftype of hemolysisincubation period
22536gamma1-2 days
632051 day

Culture and growth conditions

culture medium

  • @ref: 22536
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
63205positivegrowth37mesophilic
22536positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63205
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
6838129016arginine-hydrolysis
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6836935581indole-

enzymes

@refvalueactivityec
22536catalase+1.11.1.6
22536cytochrome-c oxidase+1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
22536--------------------

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
22536-----++/-------------------+------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
22536oral cavity of a healthy northern elephant sealCalifornia, Sausalito, The Marine Mammal CenterUSAUSANorth America
63205Oral cavity of wild northern sealCalifornia,The Marine mammal CenterUSAUSANorth America2011-06-01

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Aquatic mammal
#Host Body-Site#Oral cavity and airways

Sequence information

16S sequences

  • @ref: 22536
  • description: Bisgaardia miroungae strain Wildatric 16S ribosomal RNA gene, partial sequence
  • accession: KF871284
  • length: 1253
  • database: ena
  • NCBI tax ID: 1460875

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes90.718no
gram-positiveno98.523no
anaerobicno98.05no
aerobicyes88.799yes
halophileno85.348no
spore-formingno95.03no
thermophileno99.858yes
glucose-utilyes84.611yes
flagellatedyes78.796no
glucose-fermentno88.159no

External links

@ref: 22536

culture collection no.: DSM 28141, CCUG 65148

literature

  • topic: Phylogeny
  • Pubmed-ID: 25368140
  • title: Bisgaardia miroungae sp. nov., a new member of the family Pasteurellaceae isolated from the oral cavity of northern elephant seals (Mirounga angustirostris), and emended description of the genus Bisgaardia.
  • authors: Hansen MJ, Bertelsen MF, Christensen H, Bojesen AM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.065060-0
  • year: 2014
  • mesh: Animals, Bacterial Typing Techniques, California, DNA, Bacterial/genetics, Genes, Bacterial, Genotype, Molecular Sequence Data, Mouth/*microbiology, Pasteurellaceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seals, Earless/*microbiology, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22536Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28141Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28141)
63205Curators of the CCUGhttps://www.ccug.se/strain?id=65148Culture Collection University of Gothenburg (CCUG) (CCUG 65148)
68369Automatically annotated from API 20NE
68381Automatically annotated from API rID32STR