Strain identifier

BacDive ID: 131305

Type strain: Yes

Species: Microbacterium petrolearium

Strain history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM0410.

NCBI tax ID(s): 1652031 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22532

BacDive-ID: 131305

DSM-Number: 100924

keywords: 16S sequence, Bacteria, mesophilic

description: Microbacterium petrolearium DSM 100924 is a mesophilic bacterium that was isolated from oil-contaminated water sample.

NCBI tax id

  • NCBI tax id: 1652031
  • Matching level: species

strain history

@refhistory
22532<- JCM; JCM 19612 <- Z. Ruan, CAAS, Beijing, PR China; LAM0410
67770Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM0410.

doi: 10.13145/bacdive131305.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium petrolearium
  • full scientific name: Microbacterium petrolearium Wang et al. 2014

@ref: 22532

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium petrolearium

full scientific name: Microbacterium petrolearium Wang et al. 2014

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 22532
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22532positivegrowth28mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-10, MK-11, MK-12

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
22532oil-contaminated water sampleDagang OilfieldChinaCHNAsia
67770Oil-contaminated water from the Dagang OilfieldChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination#Oil (Fuel)
#Environmental#Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_14474.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_7448;97_8944;98_10967;99_14474&stattab=map
  • Last taxonomy: Microbacterium
  • 16S sequence: KF697702
  • Sequence Identity:
  • Total samples: 1091
  • soil counts: 246
  • aquatic counts: 189
  • animal counts: 532
  • plant counts: 124

Safety information

risk assessment

  • @ref: 22532
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22532
  • description: Microbacterium petrolearium strain LAM0410 16S ribosomal RNA gene, partial sequence
  • accession: KF697702
  • length: 1412
  • database: ena
  • NCBI tax ID: 1652031

GC content

  • @ref: 22532
  • GC-content: 67.4
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 22532

culture collection no.: DSM 100924, ACCC 00719, JCM 19612, LAM 0410

straininfo link

  • @ref: 89747
  • straininfo: 406826

literature

  • topic: Phylogeny
  • Pubmed-ID: 25253073
  • title: Microbacterium petrolearium sp. nov., isolated from an oil-contaminated water sample.
  • authors: Wang H, Xiang T, Wang Y, Song J, Zhai Y, Chen X, Li Y, Zhao B, Zhao B, Ruan Z
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.061119-0
  • year: 2014
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Oil and Gas Fields/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry, *Water Microbiology, Water Pollution, Chemical
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22532Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100924Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100924)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89747Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406826.1