Strain identifier
BacDive ID: 131305
Type strain:
Species: Microbacterium petrolearium
Strain history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM0410.
NCBI tax ID(s): 1652031 (species)
General
@ref: 22532
BacDive-ID: 131305
DSM-Number: 100924
keywords: 16S sequence, Bacteria, mesophilic
description: Microbacterium petrolearium DSM 100924 is a mesophilic bacterium that was isolated from oil-contaminated water sample.
NCBI tax id
- NCBI tax id: 1652031
- Matching level: species
strain history
@ref | history |
---|---|
22532 | <- JCM; JCM 19612 <- Z. Ruan, CAAS, Beijing, PR China; LAM0410 |
67770 | Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM0410. |
doi: 10.13145/bacdive131305.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium petrolearium
- full scientific name: Microbacterium petrolearium Wang et al. 2014
@ref: 22532
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium petrolearium
full scientific name: Microbacterium petrolearium Wang et al. 2014
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22532
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
22532 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-10, MK-11, MK-12
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
22532 | oil-contaminated water sample | Dagang Oilfield | China | CHN | Asia |
67770 | Oil-contaminated water from the Dagang Oilfield | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Contamination | #Oil (Fuel) |
#Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_14474.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_7448;97_8944;98_10967;99_14474&stattab=map
- Last taxonomy: Microbacterium
- 16S sequence: KF697702
- Sequence Identity:
- Total samples: 1091
- soil counts: 246
- aquatic counts: 189
- animal counts: 532
- plant counts: 124
Safety information
risk assessment
- @ref: 22532
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22532
- description: Microbacterium petrolearium strain LAM0410 16S ribosomal RNA gene, partial sequence
- accession: KF697702
- length: 1412
- database: ena
- NCBI tax ID: 1652031
GC content
- @ref: 22532
- GC-content: 67.4
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 22532
culture collection no.: DSM 100924, ACCC 00719, JCM 19612, LAM 0410
straininfo link
- @ref: 89747
- straininfo: 406826
literature
- topic: Phylogeny
- Pubmed-ID: 25253073
- title: Microbacterium petrolearium sp. nov., isolated from an oil-contaminated water sample.
- authors: Wang H, Xiang T, Wang Y, Song J, Zhai Y, Chen X, Li Y, Zhao B, Zhao B, Ruan Z
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.061119-0
- year: 2014
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Oil and Gas Fields/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry, *Water Microbiology, Water Pollution, Chemical
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22532 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100924 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100924) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
89747 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406826.1 |