Strain identifier

BacDive ID: 131299

Type strain: No

Species: Acinetobacter indicus

Strain Designation: 1NM-4

Strain history: CIP <- 2017, KCTC, Acinetobacter guangdongensis <- H-H. Zhu, State Key Lab. Appl. Microbiol., Guangzhou, China: strain 1NM-4

NCBI tax ID(s): 756892 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22526

BacDive-ID: 131299

DSM-Number: 100979

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, oval-shaped

description: Acinetobacter indicus 1NM-4 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from abandoned lead-zinc ore.

NCBI tax id

  • NCBI tax id: 756892
  • Matching level: species

strain history

@refhistory
22526<- KCTC <- H.-H. Zhu, State Key Lab of Applied Microbiology Southern China; 1NM-4
120086CIP <- 2017, KCTC, Acinetobacter guangdongensis <- H-H. Zhu, State Key Lab. Appl. Microbiol., Guangzhou, China: strain 1NM-4

doi: 10.13145/bacdive131299.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter indicus
  • full scientific name: Acinetobacter indicus Malhotra et al. 2012
  • synonyms

    • @ref: 20215
    • synonym: Acinetobacter guangdongensis

@ref: 22526

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter indicus

full scientific name: Acinetobacter indicus Malhotra et al. 2012

strain designation: 1NM-4

type strain: no

Morphology

cell morphology

  • @ref: 120086
  • gram stain: negative
  • cell shape: oval-shaped
  • motility: no

colony morphology

  • @ref: 22526
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22526CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
120086CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
22526positivegrowth30mesophilic
63651positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63651
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
22526catalase+1.11.1.6
22526cytochrome-c oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
22526-----------------+-+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
22526abandoned lead-zinc oremining area in Mei County; Meizhou, Guangdong Province, southern ChinaChinaCHNAsia
63651Lead-zink ore mineYunanChinaCHNAsia
120086Environment, Abandoned lead zinc ore mine siteMei county, Meizhou, Guangdong Province, Southern ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Other#Mine
#Environmental#Terrestrial

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
225261Risk group (German classification)
1200861Risk group (French classification)

Sequence information

16S sequences

  • @ref: 22526
  • description: Acinetobacter indicus strain 1NM-4 16S ribosomal RNA gene, partial sequence
  • accession: JQ608323
  • length: 1499
  • database: ena
  • NCBI tax ID: 756892

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter indicus KCTC 42012GCA_002174105contigncbi756892
66792Acinetobacter indicus strain KCTC 42012756892.24wgspatric756892
66792Acinetobacter indicus KCTC 420122916672942draftimg756892

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.65no
flagellatedno95.446no
gram-positiveno97.696no
anaerobicno98.784yes
aerobicyes94.743yes
halophileno75.258no
spore-formingno97.294no
glucose-utilno88.815no
thermophileno99.744yes
glucose-fermentno90.683yes

External links

@ref: 22526

culture collection no.: DSM 100979, CCTCC AB 2014199, GIMCC 1.656, KCTC 42012, CCUG 69701, CIP 111486

straininfo link

@refstraininfo
89741407830
89742411383

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25015678Acinetobacter guangdongensis sp. nov., isolated from abandoned lead-zinc ore.Feng GD, Yang SZ, Wang YH, Deng MR, Zhu HHInt J Syst Evol Microbiol10.1099/ijs.0.066167-02014Acinetobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, *Lead, Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry, *ZincGenetics
Phylogeny28884669Acinetobacter guangdongensis Feng et al. 2014 is a junior heterotypic synonym of Acinetobacter indicus Malhotra et al. 2012.Nemec A, Radolfova-Krizova LInt J Syst Evol Microbiol10.1099/ijsem.0.0022512017Acinetobacter/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genome, Bacterial, Nucleic Acid Hybridization, *Phylogeny, Sequence Analysis, DNAGenetics
Phylogeny29063968Draft Genome Sequence of Cyclohexylamine-Degrading Strain Acinetobacter sp. YT-02 Isolated.Yan DZ, Gan YT, Zhou H, Liu J, Li XCurr Microbiol10.1007/s00284-017-1377-92017Acinetobacter/classification/*genetics/*isolation & purification/metabolism, Base Sequence, Biodegradation, Environmental, Cyclohexylamines/*metabolism, DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sewage/microbiologyGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22526Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100979Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100979)
63651Curators of the CCUGhttps://www.ccug.se/strain?id=69701Culture Collection University of Gothenburg (CCUG) (CCUG 69701)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
89741Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407830.1
89742Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID411383.1
120086Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111486Collection of Institut Pasteur (CIP 111486)