Strain identifier
BacDive ID: 131299
Type strain:
Species: Acinetobacter indicus
Strain Designation: 1NM-4
Strain history: CIP <- 2017, KCTC, Acinetobacter guangdongensis <- H-H. Zhu, State Key Lab. Appl. Microbiol., Guangzhou, China: strain 1NM-4
NCBI tax ID(s): 756892 (species)
General
@ref: 22526
BacDive-ID: 131299
DSM-Number: 100979
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, oval-shaped
description: Acinetobacter indicus 1NM-4 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from abandoned lead-zinc ore.
NCBI tax id
- NCBI tax id: 756892
- Matching level: species
strain history
@ref | history |
---|---|
22526 | <- KCTC <- H.-H. Zhu, State Key Lab of Applied Microbiology Southern China; 1NM-4 |
120086 | CIP <- 2017, KCTC, Acinetobacter guangdongensis <- H-H. Zhu, State Key Lab. Appl. Microbiol., Guangzhou, China: strain 1NM-4 |
doi: 10.13145/bacdive131299.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter indicus
- full scientific name: Acinetobacter indicus Malhotra et al. 2012
synonyms
- @ref: 20215
- synonym: Acinetobacter guangdongensis
@ref: 22526
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter indicus
full scientific name: Acinetobacter indicus Malhotra et al. 2012
strain designation: 1NM-4
type strain: no
Morphology
cell morphology
- @ref: 120086
- gram stain: negative
- cell shape: oval-shaped
- motility: no
colony morphology
- @ref: 22526
- incubation period: 1-2 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
22526 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
120086 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
22526 | positive | growth | 30 | mesophilic |
63651 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63651
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
22526 | catalase | + | 1.11.1.6 |
22526 | cytochrome-c oxidase | - | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
22526 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
22526 | abandoned lead-zinc ore | mining area in Mei County; Meizhou, Guangdong Province, southern China | China | CHN | Asia |
63651 | Lead-zink ore mine | Yunan | China | CHN | Asia |
120086 | Environment, Abandoned lead zinc ore mine site | Mei county, Meizhou, Guangdong Province, Southern China | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Other | #Mine |
#Environmental | #Terrestrial |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
22526 | 1 | Risk group (German classification) |
120086 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 22526
- description: Acinetobacter indicus strain 1NM-4 16S ribosomal RNA gene, partial sequence
- accession: JQ608323
- length: 1499
- database: ena
- NCBI tax ID: 756892
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acinetobacter indicus KCTC 42012 | GCA_002174105 | contig | ncbi | 756892 |
66792 | Acinetobacter indicus strain KCTC 42012 | 756892.24 | wgs | patric | 756892 |
66792 | Acinetobacter indicus KCTC 42012 | 2916672942 | draft | img | 756892 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 91.65 | no |
flagellated | no | 95.446 | no |
gram-positive | no | 97.696 | no |
anaerobic | no | 98.784 | yes |
aerobic | yes | 94.743 | yes |
halophile | no | 75.258 | no |
spore-forming | no | 97.294 | no |
glucose-util | no | 88.815 | no |
thermophile | no | 99.744 | yes |
glucose-ferment | no | 90.683 | yes |
External links
@ref: 22526
culture collection no.: DSM 100979, CCTCC AB 2014199, GIMCC 1.656, KCTC 42012, CCUG 69701, CIP 111486
straininfo link
@ref | straininfo |
---|---|
89741 | 407830 |
89742 | 411383 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 25015678 | Acinetobacter guangdongensis sp. nov., isolated from abandoned lead-zinc ore. | Feng GD, Yang SZ, Wang YH, Deng MR, Zhu HH | Int J Syst Evol Microbiol | 10.1099/ijs.0.066167-0 | 2014 | Acinetobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, *Lead, Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry, *Zinc | Genetics |
Phylogeny | 28884669 | Acinetobacter guangdongensis Feng et al. 2014 is a junior heterotypic synonym of Acinetobacter indicus Malhotra et al. 2012. | Nemec A, Radolfova-Krizova L | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002251 | 2017 | Acinetobacter/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genome, Bacterial, Nucleic Acid Hybridization, *Phylogeny, Sequence Analysis, DNA | Genetics |
Phylogeny | 29063968 | Draft Genome Sequence of Cyclohexylamine-Degrading Strain Acinetobacter sp. YT-02 Isolated. | Yan DZ, Gan YT, Zhou H, Liu J, Li X | Curr Microbiol | 10.1007/s00284-017-1377-9 | 2017 | Acinetobacter/classification/*genetics/*isolation & purification/metabolism, Base Sequence, Biodegradation, Environmental, Cyclohexylamines/*metabolism, DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sewage/microbiology | Genetics |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22526 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100979 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100979) | |
63651 | Curators of the CCUG | https://www.ccug.se/strain?id=69701 | Culture Collection University of Gothenburg (CCUG) (CCUG 69701) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68369 | Automatically annotated from API 20NE | |||
89741 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407830.1 | |
89742 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID411383.1 | |
120086 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111486 | Collection of Institut Pasteur (CIP 111486) |