Strain identifier
BacDive ID: 131297
Type strain: 
Species: Arthrobacter bambusae
Strain Designation: THG-GM18
Strain history: T.-H. Yi THG-GM18.
NCBI tax ID(s): 1338426 (species)
version 8.1 (current version)
General
@ref: 22524
BacDive-ID: 131297
DSM-Number: 100922
keywords: 16S sequence, Bacteria, mesophilic
description: Arthrobacter bambusae THG-GM18 is a mesophilic bacterium that was isolated from soil of a bamboo grove.
NCBI tax id
- NCBI tax id: 1338426
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22524 | <- JCM; JCM 19335 <-T.-H. Yi, College of Life Science, Kyung Hee University, Republic of Korea; THG-GM18 |
| 67770 | T.-H. Yi THG-GM18. |
doi: 10.13145/bacdive131297.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter bambusae
- full scientific name: Arthrobacter bambusae Park et al. 2014
@ref: 22524
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter bambusae
full scientific name: Arthrobacter bambusae Park et al. 2014
strain designation: THG-GM18
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22524
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22524 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
murein
- @ref: 22524
- murein short key: A11.17
- type: A3alpha L-Lys-L-Ala-L-Thr-L-Ala
observation
- @ref: 67770
- observation: quinones: MK-9
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 22524 | soil of a bamboo grove | Republic of Korea | KOR | Asia |
| 67770 | Soil of a bamboo grove |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Grove (Orchard) |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_1285.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_99;97_138;98_155;99_1285&stattab=map
- Last taxonomy: Micrococcaceae
- 16S sequence: KF150696
- Sequence Identity:
- Total samples: 110
- soil counts: 49
- aquatic counts: 9
- animal counts: 22
- plant counts: 30
Safety information
risk assessment
- @ref: 22524
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22524
- description: Arthrobacter bambusae strain THG-GM18 16S ribosomal RNA gene, partial sequence
- accession: KF150696
- length: 1415
- database: ena
- NCBI tax ID: 1338426
GC content
| @ref | GC-content | method |
|---|---|---|
| 22524 | 61.0 | |
| 67770 | 61 | high performance liquid chromatography (HPLC) |
External links
@ref: 22524
culture collection no.: DSM 100922, JCM 19335, KACC 17531
straininfo link
- @ref: 89739
- straininfo: 407972
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24925596 | Arthrobacter bambusae sp. nov., isolated from soil of a bamboo grove. | Park Y, Kook M, Ngo HTT, Kim KY, Park SY, Mavlonov GT, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijs.0.064550-0 | 2014 | Arthrobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Bambusa/*microbiology, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 33555248 | Arthrobacter terricola sp. nov., isolated from forest soil. | Trinh NH, Kim J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004686 | 2021 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22524 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100922 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100922) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89739 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407972.1 |