Strain identifier

BacDive ID: 131284

Type strain: Yes

Species: Ancylobacter defluvii

Strain Designation: SK15

Strain history: <- N. V. Doronina, Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Science, Pushchino, Russia; SK15

NCBI tax ID(s): 1282440 (species)

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General

@ref: 22511

BacDive-ID: 131284

DSM-Number: 29296

keywords: 16S sequence, Bacteria, aerobe, mesophilic

description: Ancylobacter defluvii SK15 is an aerobe, mesophilic bacterium that was isolated from wastes of salt mine.

NCBI tax id

  • NCBI tax id: 1282440
  • Matching level: species

strain history

  • @ref: 22511
  • history: <- N. V. Doronina, Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Science, Pushchino, Russia; SK15

doi: 10.13145/bacdive131284.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Xanthobacteraceae
  • genus: Ancylobacter
  • species: Ancylobacter defluvii
  • full scientific name: Ancylobacter defluvii Poroshina et al. 2014

@ref: 22511

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Xanthobacteraceae

genus: Ancylobacter

species: Ancylobacter defluvii

full scientific name: Ancylobacter defluvii Poroshina et al. 2014

strain designation: SK15

type strain: yes

Morphology

colony morphology

  • @ref: 63030
  • incubation period: 2 days

Culture and growth conditions

culture medium

  • @ref: 22511
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1; with strain-specific modifications) Composition: Agar 15.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22511positivegrowth28mesophilic
63030positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 63030
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
22511----+---++-+--+--+--+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
22511wastes of salt minePerm region, SolikamskRussiaRUSEurope
63030Sludge from saline sourcePerm region,SolikamskRussiaRUSEurope2009

isolation source categories

Cat1Cat2Cat3
#Engineered#Other#Mine
#Engineered#Waste
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_57345.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_355;96_2984;97_3669;98_40879;99_57345&stattab=map
  • Last taxonomy: Ancylobacter
  • 16S sequence: KC243678
  • Sequence Identity:
  • Total samples: 128
  • soil counts: 31
  • aquatic counts: 63
  • animal counts: 24
  • plant counts: 10

Safety information

risk assessment

  • @ref: 22511
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22511
  • description: Ancylobacter defluvii strain SK15 from Russia 16S ribosomal RNA gene, partial sequence
  • accession: KC243678
  • length: 1381
  • database: ena
  • NCBI tax ID: 1282440

External links

@ref: 22511

culture collection no.: DSM 29296, CCUG 63806, VKM B-2789

straininfo link

  • @ref: 89727
  • straininfo: 402865

literature

  • topic: Phylogeny
  • Pubmed-ID: 28945527
  • title: Ancylobacter pratisalsi sp. nov. with plant growth promotion abilities from the rhizosphere of Plantago winteri Wirtg.
  • authors: Suarez C, Ratering S, Schafer J, Schnell S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002320
  • year: 2017
  • mesh: Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Germany, Phospholipids/chemistry, *Phylogeny, Plantago/growth & development/*microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Salt-Tolerant Plants/growth & development/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22511Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29296Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29296)
63030Curators of the CCUGhttps://www.ccug.se/strain?id=63806Culture Collection University of Gothenburg (CCUG) (CCUG 63806)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89727Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402865.1