Strain identifier
BacDive ID: 131281
Type strain: 
Species: Streptomyces graminisoli
Strain Designation: JR-19
Strain history: <- KACC; KACC 16472 <- K.S. Whang (Mokwon Univ.); JR-19
NCBI tax ID(s): 1367504 (species)
version 8.1 (current version)
General
@ref: 22508
BacDive-ID: 131281
DSM-Number: 102004
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces graminisoli JR-19 is a mesophilic bacterium that was isolated from bamboo rizosphere soil.
NCBI tax id
- NCBI tax id: 1367504
- Matching level: species
strain history
- @ref: 22508
- history: <- KACC; KACC 16472 <- K.S. Whang (Mokwon Univ.); JR-19
doi: 10.13145/bacdive131281.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces graminisoli
- full scientific name: Streptomyces graminisoli Lee and Whang 2014
@ref: 22508
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces graminisoli
full scientific name: Streptomyces graminisoli Lee and Whang 2014
strain designation: JR-19
type strain: yes
Morphology
multimedia
- @ref: 22508
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102004.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22508 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
| 22508 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 22508
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22508
- sample type: bamboo (Sasa borealis) rizosphere soil
- host species: Sasa borealis
- geographic location: Damyang
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
Safety information
risk assessment
- @ref: 22508
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22508
- description: Streptomyces graminisoli strain JR-19 16S ribosomal RNA gene, partial sequence
- accession: HQ267975
- length: 1453
- database: ena
- NCBI tax ID: 1367504
GC content
- @ref: 22508
- GC-content: 73.5
External links
@ref: 22508
culture collection no.: DSM 102004, KACC 16472, NBRC 108883
straininfo link
- @ref: 89725
- straininfo: 399695
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24478213 | Streptomyces graminisoli sp. nov. and Streptomyces rhizophilus sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil. | Lee HJ, Whang KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.055210-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 27902221 | Streptomyces fuscichromogenes sp. nov., an actinomycete from soil. | Zhang H, Zheng J, Zhuang J, Xin Y, Zheng X, Zhang J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001573 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rainforest, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Tropical Climate, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22508 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102004 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102004) | |
| 89725 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399695.1 |