Strain identifier

BacDive ID: 131275

Type strain: Yes

Species: Streptomyces graminilatus

Strain Designation: JL-6

Strain history: <- KACC; KACC 16470 <- K.S. Whang (Mokwon Univ.); JL-6

NCBI tax ID(s): 1464070 (species)

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General

@ref: 22502

BacDive-ID: 131275

DSM-Number: 102005

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces graminilatus JL-6 is a mesophilic bacterium that was isolated from litter taken from a bamboo.

NCBI tax id

  • NCBI tax id: 1464070
  • Matching level: species

strain history

  • @ref: 22502
  • history: <- KACC; KACC 16470 <- K.S. Whang (Mokwon Univ.); JL-6

doi: 10.13145/bacdive131275.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces graminilatus
  • full scientific name: Streptomyces graminilatus Lee and Whang 2014

@ref: 22502

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces graminilatus

full scientific name: Streptomyces graminilatus Lee and Whang 2014

strain designation: JL-6

type strain: yes

Morphology

multimedia

  • @ref: 22502
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102005.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22502ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
22502GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 22502
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 22502
  • sample type: litter taken from a bamboo
  • geographic location: Damyang, Chonnam
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 22502
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22502
  • description: Streptomyces graminilatus strain JL-6 16S ribosomal RNA gene, partial sequence
  • accession: HQ268006
  • length: 1462
  • database: ena
  • NCBI tax ID: 1464070

GC content

  • @ref: 22502
  • GC-content: 72.8

External links

@ref: 22502

culture collection no.: DSM 102005, KACC 16470, NBRC 108882

straininfo link

  • @ref: 89719
  • straininfo: 405653

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24123200Streptomyces graminilatus sp. nov., isolated from bamboo litter.Lee HJ, Whang KSInt J Syst Evol Microbiol10.1099/ijs.0.049528-02013Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny25687349Streptomyces albiflavescens sp. nov., an actinomycete isolated from soil.Han X, Zheng J, Xin D, Xin Y, Wei X, Zhang JInt J Syst Evol Microbiol10.1099/ijs.0.0001212015Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rainforest, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny27476065Streptomyces castaneus sp. nov., a novel actinomycete isolated from the rhizosphere of Peucedanum praeruptorum Dunn.Zhou S, Li Z, Bai L, Yan K, Zhao J, Lu C, Liu C, Wang X, Xiang WArch Microbiol10.1007/s00203-016-1274-92016Apiaceae/*microbiology, Bacterial Typing Techniques, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, *Soil Microbiology, Streptomyces/classification/genetics/*isolation & purification/metabolismMetabolism
Phylogeny27601150Streptomyces lacrimifluminis sp. nov., a novel actinobacterium that produces antibacterial compounds, isolated from soil.Zhang B, Tang S, Chen X, Zhang L, Zhang G, Zhang W, Liu G, Chen T, Li S, Dyson PInt J Syst Evol Microbiol10.1099/ijsem.0.0014562016Anti-Bacterial Agents/*biosynthesis, Antibiosis, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22502Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102005Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102005)
89719Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405653.1