Strain identifier

BacDive ID: 13123

Type strain: Yes

Species: Pseudomonas vancouverensis

Strain Designation: DhA-51

Strain history: CIP <- 2000, W.W. Mohn, British Columbia Univ., Vancouver, Canada: strain DhA-51

NCBI tax ID(s): 95300 (species)

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General

@ref: 6971

BacDive-ID: 13123

DSM-Number: 17555

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Pseudomonas vancouverensis DhA-51 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from forest soil.

NCBI tax id

  • NCBI tax id: 95300
  • Matching level: species

strain history

@refhistory
6971<- W. W. Mohn; DhA-51
123793CIP <- 2000, W.W. Mohn, British Columbia Univ., Vancouver, Canada: strain DhA-51

doi: 10.13145/bacdive13123.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas vancouverensis
  • full scientific name: Pseudomonas vancouverensis Mohn et al. 1999

@ref: 6971

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas vancouverensis

full scientific name: Pseudomonas vancouverensis Mohn et al. 1999

strain designation: DhA-51

type strain: yes

Morphology

cell morphology

  • @ref: 123793
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 123793
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6971REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)yeshttps://mediadive.dsmz.de/medium/535bName: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water
39559MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123793CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6971positivegrowth30mesophilic
39559positivegrowth30mesophilic
58651positivegrowth30mesophilic
123793positivegrowth5-30
123793nogrowth37mesophilic
123793nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
58651aerobe
123793obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
123793NaClpositivegrowth0-6 %
123793NaClnogrowth8 %
123793NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12379316947citrate+carbon source
1237934853esculin-hydrolysis
12379317632nitrate+reduction
12379316301nitrite-reduction
12379317632nitrate-respiration

antibiotic resistance

  • @ref: 123793
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 123793
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
123793oxidase+
123793beta-galactosidase-3.2.1.23
123793alcohol dehydrogenase-1.1.1.1
123793gelatinase-
123793amylase-
123793DNase-
123793caseinase-3.4.21.50
123793catalase+1.11.1.6
123793tween esterase-
123793lecithinase-
123793lipase-
123793lysine decarboxylase-4.1.1.18
123793ornithine decarboxylase-4.1.1.17
123793protease-
123793tryptophan deaminase-
123793urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123793-++++++-+-++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123793++--+--------------+------+----+-+----------+--++++--+-----+++-----+-+++++++++-+++++-++-+++++++++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
6971forest soilVancouverCanadaCANNorth America
58651Forest soilVancouverCanadaCANNorth America1998
123793Environment, Soil, forestVancouverCanadaCANNorth America1998

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_185.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_98;99_185&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: AM293568
  • Sequence Identity:
  • Total samples: 2464
  • soil counts: 833
  • aquatic counts: 448
  • animal counts: 521
  • plant counts: 662

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
69711Risk group (German classification)
1237931Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pseudomonas vancouverensis partial 16S rRNA gene, type strain DSM 17555T = Dha-51TAM2935681459ena95300
6971Pseudomonas vancouverensis partial 16S rRNA gene, type strain DhA-51TAJ0115071492ena95300

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas vancouverensis CCUG 49675GCA_008801375contigncbi95300
66792Pseudomonas vancouverensis Dha-51GCA_004348895contigncbi95300
66792Pseudomonas vancouverensis strain CCUG 4967595300.16wgspatric95300

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes93.583no
flagellatedyes83.878no
gram-positiveno98.257no
anaerobicno97.769yes
halophileno87.857no
spore-formingno95.889no
thermophileno99.862yes
glucose-utilyes94.127no
aerobicyes92.571yes
glucose-fermentno90.187no

External links

@ref: 6971

culture collection no.: CCUG 49675, DSM 17555, ATCC 700688, CIP 106707

straininfo link

  • @ref: 82331
  • straininfo: 44081

literature

  • topic: Phylogeny
  • Pubmed-ID: 32553034
  • title: Pseudomonas izuensis sp. nov., a novel species isolated from Izu Oshima, Japan.
  • authors: Lu YJ, Morimoto Y, Tohya M, Hishinuma T, Hiramatsu K, Kirikae T, Baba T
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004271
  • year: 2020
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Islands, Japan, Nucleic Acid Hybridization, *Phylogeny, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6971Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17555)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17555
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39559Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18868
58651Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 49675)https://www.ccug.se/strain?id=49675
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82331Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44081.1StrainInfo: A central database for resolving microbial strain identifiers
123793Curators of the CIPCollection of Institut Pasteur (CIP 106707)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106707