Strain identifier
BacDive ID: 13121
Type strain: 
Species: Thauera sp.
Strain Designation: PN-1
Strain history: <- ATCC (A. xylosoxidans ssp. xylosoxidans) <- G.D. Hageman; PN-1 (Alcaligenes xylosoxidans ssp. denitrificans) <- B.F. Taylor (Pseudomonas sp.)
NCBI tax ID(s): 1905334 (species)
version 8.1 (current version)
General
@ref: 2705
BacDive-ID: 13121
DSM-Number: 6505
keywords: 16S sequence, Bacteria, mesophilic
description: Thauera sp. PN-1 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1905334
- Matching level: species
strain history
- @ref: 2705
- history: <- ATCC (A. xylosoxidans ssp. xylosoxidans) <- G.D. Hageman; PN-1 (Alcaligenes xylosoxidans ssp. denitrificans) <- B.F. Taylor (Pseudomonas sp.)
doi: 10.13145/bacdive13121.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Zoogloeaceae
- genus: Thauera
- species: Thauera sp.
- full scientific name: Thauera Macy et al. 1993
@ref: 2705
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Pseudomonadales
family: Zoogloeaceae
genus: Thauera
species: Thauera sp.
full scientific name: Thauera sp.
strain designation: PN-1
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 2705 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
| 2705 | ALCALIGENES XYLOSOXYDANS MEDIUM WITH BENZOATE (DSMZ Medium 471) | yes | https://mediadive.dsmz.de/medium/471 | Name: ALCALIGENES XYLOSOXYDANS MEDIUM WITH BENZOATE (DSMZ Medium 471) Composition: K2HPO4 5.10978 g/l KNO3 1.99601 g/l KH2PO4 1.49701 g/l Na-benzoate 0.918164 g/l NH4Cl 0.299401 g/l MgSO4 x 7 H2O 0.199601 g/l CaCl2 0.00998004 g/l EDTA 0.000998004 g/l FeSO4 x 7 H2O 0.000399202 g/l H3BO3 5.98802e-05 g/l CoCl2 x 6 H2O 3.99202e-05 g/l ZnSO4 x 7 H2O 1.99601e-05 g/l Na2MoO4 x 2 H2O 5.98802e-06 g/l MnCl2 x 4 H2O 5.98802e-06 g/l NiCl2 x 6 H2O 3.99202e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water |
culture temp
- @ref: 2705
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | - | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | - | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2705 | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 2705
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_1902.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_594;97_695;98_810;99_1902&stattab=map
- Last taxonomy: Thauera
- 16S sequence: AF170281
- Sequence Identity:
- Total samples: 548
- soil counts: 20
- aquatic counts: 491
- animal counts: 31
- plant counts: 6
Sequence information
16S sequences
- @ref: 2705
- description: Thauera aromatica 16S ribosomal RNA gene, partial sequence
- accession: AF170281
- length: 1304
- database: ena
- NCBI tax ID: 59405
External links
@ref: 2705
culture collection no.: DSM 6505, ATCC 43374
straininfo link
- @ref: 82329
- straininfo: 41805
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2705 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6505) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6505 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 68369 | Automatically annotated from API 20NE | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 82329 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID41805.1 | StrainInfo: A central database for resolving microbial strain identifiers |