Strain identifier
BacDive ID: 131181
Type strain: 
Species: Hydrotalea flava
Strain history: <- CCUG
NCBI tax ID(s): 714549 (species)
version 8.1 (current version)
General
@ref: 22473
BacDive-ID: 131181
DSM-Number: 28441
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, rod-shaped
description: Hydrotalea flava DSM 28441 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from industry, distilled water.
NCBI tax id
- NCBI tax id: 714549
- Matching level: species
strain history
- @ref: 22473
- history: <- CCUG
doi: 10.13145/bacdive131181.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Chitinophagia
- order: Chitinophagales
- family: Chitinophagaceae
- genus: Hydrotalea
- species: Hydrotalea flava
- full scientific name: Hydrotalea flava Kämpfer et al. 2011
@ref: 22473
domain: Bacteria
phylum: Bacteroidetes
class: Chitinophagia
order: Sphingobacteriales
family: Chitinophagaceae
genus: Hydrotalea
species: Hydrotalea flava
full scientific name: Hydrotalea flava Kämpfer et al. 2011 emend. Albuquerque et al. 2012
type strain: yes
Morphology
cell morphology
- @ref: 29863
- gram stain: negative
- cell length: 1.75 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 29863
- production: yes
Culture and growth conditions
culture medium
- @ref: 22473
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22473 | positive | growth | 28 | mesophilic |
| 29863 | positive | growth | 25-30 | mesophilic |
| 59180 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 29863 | facultative anaerobe |
| 59180 | aerobe |
halophily
- @ref: 29863
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <4.0 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29863 | 17057 | cellobiose | + | carbon source |
| 29863 | 28757 | fructose | + | carbon source |
| 29863 | 28260 | galactose | + | carbon source |
| 29863 | 28053 | melibiose | + | carbon source |
| 29863 | 26546 | rhamnose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29863 | catalase | + | 1.11.1.6 |
| 29863 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|
| 22473 | industry, distilled water | Sweden | SWE | Europe | |
| 59180 | Industry,distilled water | Sweden | SWE | Europe | 2005-07-01 |
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Engineered | #Industrial |
| #Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_1063.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_185;96_613;97_716;98_835;99_1063&stattab=map
- Last taxonomy: Hydrotalea
- 16S sequence: FN665659
- Sequence Identity:
- Total samples: 11702
- soil counts: 1385
- aquatic counts: 3236
- animal counts: 6417
- plant counts: 664
Safety information
risk assessment
- @ref: 22473
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22473
- description: Hydrotalea flava partial 16S rRNA gene, strain CCUG 51397
- accession: FN665659
- length: 1409
- database: ena
- NCBI tax ID: 714549
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Hydrotalea flava CCUG 51397 | GCA_001623405 | contig | ncbi | 714549 |
| 66792 | Hydrotalea flava strain CCUG 51397 | 714549.28 | wgs | patric | 714549 |
| 66792 | Hydrotalea flava CCUG 51397 | 2751185699 | draft | img | 714549 |
GC content
- @ref: 29863
- GC-content: 42
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 96.742 | yes |
| anaerobic | no | 98.743 | yes |
| halophile | no | 97.053 | no |
| spore-forming | no | 93.175 | no |
| glucose-util | yes | 89.707 | no |
| thermophile | no | 68.471 | yes |
| aerobic | yes | 87.311 | no |
| motile | no | 95.957 | yes |
| flagellated | no | 98.048 | yes |
| glucose-ferment | no | 88.994 | no |
External links
@ref: 22473
culture collection no.: DSM 28441, CCM 7760, CCUG 51397
straininfo link
- @ref: 89626
- straininfo: 303539
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20382796 | Hydrotalea flava gen. nov., sp. nov., a new member of the phylum Bacteroidetes and allocation of the genera Chitinophaga, Sediminibacterium, Lacibacter, Flavihumibacter, Flavisolibacter, Niabella, Niastella, Segetibacter, Parasegetibacter, Terrimonas, Ferruginibacter, Filimonas and Hydrotalea to the family Chitinophagaceae fam. nov. | Kampfer P, Lodders N, Falsen E | Int J Syst Evol Microbiol | 10.1099/ijs.0.023002-0 | 2010 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sweden, Water Microbiology | Genetics |
| Phylogeny | 24170777 | Proposal of Vibrionimonas magnilacihabitans gen. nov., sp. nov., a curved Gram-stain-negative bacterium isolated from lake water. | Albert RA, Zitomer D, Dollhopf M, Schauer-Gimenez AE, Struble C, King M, Son S, Langer S, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.056663-0 | 2013 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/microbiology, Lakes/*microbiology, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Vitamin K 2/analogs & derivatives/chemistry, Wisconsin | Genetics |
| Genetics | 27284140 | Draft Genome Sequence of Hydrotalea flava Strain CCUG 51397T. | Leite LR, Medeiros JD, Fernandes GR, Araujo F, Pylro VS, Salim AC, Volpini A, Oliveira G, Cuadros-Orellana S | Genome Announc | 10.1128/genomeA.00527-16 | 2016 |
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22473 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28441 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28441) | |||
| 29863 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26237 | 28776041 | |
| 59180 | Curators of the CCUG | https://www.ccug.se/strain?id=51397 | Culture Collection University of Gothenburg (CCUG) (CCUG 51397) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 89626 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID303539.1 |