Strain identifier
BacDive ID: 131173
Type strain: 
Species: Lactobacillus taiwanensis
Strain Designation: ST-465-5-N
Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; ST-465-5-N
NCBI tax ID(s): 508451 (species)
version 8.1 (current version)
General
@ref: 22465
BacDive-ID: 131173
DSM-Number: 28674
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Lactobacillus taiwanensis ST-465-5-N is a microaerophile, mesophilic bacterium that was isolated from mouse gut.
NCBI tax id
- NCBI tax id: 508451
- Matching level: species
strain history
- @ref: 22465
- history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; ST-465-5-N
doi: 10.13145/bacdive131173.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactobacillus
- species: Lactobacillus taiwanensis
- full scientific name: Lactobacillus taiwanensis Wang et al. 2009
@ref: 22465
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus taiwanensis
full scientific name: Lactobacillus taiwanensis Wang et al. 2009
strain designation: ST-465-5-N
type strain: no
Morphology
colony morphology
- @ref: 22465
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 22465
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 22465
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 22465
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
- @ref: 22465
- sample type: mouse gut
- geographic location: Freising
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Muridae (Mouse/Rat) |
| #Host Body-Site | #Gastrointestinal tract |
taxonmaps
- @ref: 69479
- File name: preview.99_840.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_506;97_581;98_668;99_840&stattab=map
- Last taxonomy: Lactobacillus
- 16S sequence: KR364778
- Sequence Identity:
- Total samples: 185237
- soil counts: 4782
- aquatic counts: 5652
- animal counts: 173268
- plant counts: 1535
Safety information
risk assessment
- @ref: 22465
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22465
- description: Lactobacillus sp. ST-465-5-N 16S ribosomal RNA gene, partial sequence
- accession: KR364778
- length: 1419
- database: ena
- NCBI tax ID: 1796641
Genome sequences
- @ref: 66792
- description: Lactobacillus taiwanensis DSM 28674
- accession: GCA_024622435
- assembly level: contig
- database: ncbi
- NCBI tax ID: 508451
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 97.895 | no |
| gram-positive | yes | 95.825 | no |
| anaerobic | no | 62.667 | yes |
| aerobic | no | 97.982 | yes |
| halophile | yes | 86.471 | no |
| spore-forming | no | 95.372 | no |
| motile | no | 95.839 | no |
| glucose-ferment | yes | 92.664 | no |
| thermophile | no | 99.786 | yes |
| glucose-util | yes | 90.389 | no |
External links
@ref: 22465
culture collection no.: DSM 28674
straininfo link
- @ref: 89618
- straininfo: 407627
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22465 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28674 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28674) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89618 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407627.1 |