Strain identifier
BacDive ID: 131172
Type strain: 
Species: Saccharospirillum salsuginis
Strain Designation: YIM-Y25, CGMCC
Variant: Isotype of BacDive ID 24542
Strain history: <- X. Cui, YIM; YIM-y25 <- H.-M. Li, X. L. Cui and G. Chen
NCBI tax ID(s): 418750 (species)
version 8.1 (current version)
General
@ref: 22464
BacDive-ID: 131172
DSM-Number: 17054
keywords: Bacteria, mesophilic
description: Saccharospirillum salsuginis YIM-Y25 is a mesophilic bacterium that was isolated from soil samples from a salt mine.
NCBI tax id
- NCBI tax id: 418750
- Matching level: species
strain history
- @ref: 22464
- history: <- X. Cui, YIM; YIM-y25 <- H.-M. Li, X. L. Cui and G. Chen
doi: 10.13145/bacdive131172.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Saccharospirillaceae
- genus: Saccharospirillum
- species: Saccharospirillum salsuginis
- full scientific name: Saccharospirillum salsuginis Chen et al. 2009
@ref: 22464
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Saccharospirillaceae
genus: Saccharospirillum
species: Saccharospirillum salsuginis
full scientific name: Saccharospirillum salsuginis Chen et al. 2009
strain designation: YIM-Y25, CGMCC
variant: Isotype of BacDive ID 24542
type strain: no
Culture and growth conditions
culture medium
- @ref: 22464
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 22464
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22464
- sample type: soil samples from a salt mine
- geographic location: Yunnan
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Other | #Mine |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 22464
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 22464
culture collection no.: DSM 17054
straininfo link
- @ref: 89617
- straininfo: 398399
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19502320 | Saccharospirillum salsuginis sp. nov., a gammaproteobacterium from a subterranean brine. | Chen YG, Cui XL, Li QY, Wang YX, Tang SK, Liu ZX, Wen ML, Peng Q, Xu LH | Int J Syst Evol Microbiol | 10.1099/ijs.0.003616-0 | 2009 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, *Soil Microbiology, Species Specificity | Genetics |
| Phylogeny | 20363931 | Saccharospirillum aestuarii sp. nov., isolated from tidal flat sediment, and an emended description of the genus Saccharospirillum. | Choi A, Oh HM, Cho JC | Int J Syst Evol Microbiol | 10.1099/ijs.0.022996-0 | 2010 | Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Phylogeny | 28675353 | Saccharospirillum correiae sp. nov., an endophytic bacterium isolated from the halophyte Halimione portulacoides. | Fidalgo C, Rocha J, Proenca DN, Morais PV, Alves A, Henriques I | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001914 | 2017 | Bacterial Typing Techniques, Base Composition, Chenopodiaceae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, *Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Wetlands | Transcriptome |
| Phylogeny | 30016235 | Saccharospirillum mangrovi sp. nov., a bacterium isolated from mangrove sediment. | Zhang W, Yuan Y, Su D, Ding L, Yan X, Wu M, Epstein SS, He S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002899 | 2018 | Avicennia, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 31671052 | Saccharospirillum alexandrii sp. nov., isolated from the toxigenic marine dinoflagellate Alexandrium catenella LZT09. | Yang Q, Jiang Z, Zhou X, Xie Z, Wang Y, Wang D, Feng L, Yang G, Ge Y, Zhang X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003832 | 2020 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Dinoflagellida/*microbiology, Eutrophication, Fatty Acids/chemistry, Gammaproteobacteria/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22464 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17054 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17054) | |
| 89617 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398399.1 |