Strain identifier
BacDive ID: 13117
Type strain:
Species: Pseudomonas mosselii
Strain history: CIP <- 1997, M. Elomari, Med. Univ., Lille, France: strain CFML 90-83
NCBI tax ID(s): 1403339 (strain), 78327 (species)
General
@ref: 7024
BacDive-ID: 13117
DSM-Number: 17497
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped, human pathogen
description: Pseudomonas mosselii DSM 17497 is an obligate aerobe, mesophilic, Gram-negative human pathogen that was isolated from medical specimen.
NCBI tax id
NCBI tax id | Matching level |
---|---|
78327 | species |
1403339 | strain |
strain history
@ref | history |
---|---|
7024 | <- D. Izard <- M. Elomari; CFML 90-83 |
121147 | CIP <- 1997, M. Elomari, Med. Univ., Lille, France: strain CFML 90-83 |
doi: 10.13145/bacdive13117.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas mosselii
- full scientific name: Pseudomonas mosselii Dabboussi et al. 2002
@ref: 7024
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas mosselii
full scientific name: Pseudomonas mosselii Dabboussi et al. 2002
type strain: yes
Morphology
cell morphology
- @ref: 121147
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 121147
- production: no
- name: Pyocyanin
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7024 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
7024 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
34713 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
121147 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7024 | positive | growth | 30 | mesophilic |
34713 | positive | growth | 30 | mesophilic |
121147 | positive | growth | 5-37 | |
121147 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 121147
- oxygen tolerance: obligate aerobe
compound production
- @ref: 7024
- compound: siderophore
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
121147 | NaCl | positive | growth | 0-4 % |
121147 | NaCl | no | growth | 6 % |
121147 | NaCl | no | growth | 8 % |
121147 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
121147 | citrate | + | carbon source | 16947 |
121147 | esculin | - | hydrolysis | 4853 |
121147 | nitrate | - | reduction | 17632 |
121147 | nitrite | - | reduction | 16301 |
121147 | phenol | + | degradation | 15882 |
121147 | nitrate | - | respiration | 17632 |
antibiotic resistance
- @ref: 121147
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 121147
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
121147 | oxidase | + | |
121147 | beta-galactosidase | + | 3.2.1.23 |
121147 | alcohol dehydrogenase | - | 1.1.1.1 |
121147 | gelatinase | - | |
121147 | amylase | - | |
121147 | DNase | - | |
121147 | caseinase | - | 3.4.21.50 |
121147 | catalase | + | 1.11.1.6 |
121147 | tween esterase | - | |
121147 | lecithinase | + | |
121147 | lipase | - | |
121147 | lysine decarboxylase | - | 4.1.1.18 |
121147 | ornithine decarboxylase | - | 4.1.1.17 |
121147 | tryptophan deaminase | - | |
121147 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121147 | - | - | + | + | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121147 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121147 | + | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | + | - | - | - | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | + | - | + | - | - | + | - | - | + | + | + | + | + | + | - | - | - | - | - | - | + | + | + | + | + | + | + | + | + | + | + | + | + | - | - | + | - | + | + | + | + | + | + | + | - | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | isolation date |
---|---|---|---|---|---|
7024 | medical specimen | France | FRA | Europe | |
121147 | Human, Tracheal aspirate | France | FRA | Europe | 1990 |
isolation source categories
- Cat1: #Infection
- Cat2: #Patient
- Cat3: #Specimen
taxonmaps
- @ref: 69479
- File name: preview.99_239.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_203;99_239&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: AF072688
- Sequence Identity:
- Total samples: 2133
- soil counts: 368
- aquatic counts: 543
- animal counts: 799
- plant counts: 423
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
7024 | yes, in single cases | 1 | Risk group (German classification) |
121147 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 7024
- description: Pseudomonas mosselii strain CIP 105259 16S ribosomal RNA gene, complete sequence
- accession: AF072688
- length: 1513
- database: ena
- NCBI tax ID: 78327
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Pseudomonas mosselii DSM 17497 | GCA_019823065 | complete | ncbi | 78327 |
66792 | Pseudomonas mosselii DSM 17497 | GCA_000621225 | scaffold | ncbi | 1403339 |
66792 | Pseudomonas mosselii DSM 17497 | 1403339.3 | wgs | patric | 1403339 |
66792 | Pseudomonas mosselii strain DSM 17497 | 78327.27 | complete | patric | 78327 |
66792 | Pseudomonas mosselii DSM 17497 | 2556921653 | draft | img | 1403339 |
66792 | Pseudomonas mosselii strain DSM 17497 | 78327.30 | complete | patric | 78327 |
66792 | Pseudomonas mosselii strain DSM 17497 | 78327.32 | complete | patric | 78327 |
66792 | Pseudomonas mosselii strain DSM 17497 | 78327.28 | complete | patric | 78327 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | yes | 85.035 | no |
gram-positive | no | 98.276 | no |
anaerobic | no | 98.303 | no |
aerobic | yes | 95.098 | no |
halophile | no | 86.402 | no |
spore-forming | no | 94.977 | no |
motile | yes | 91.36 | no |
thermophile | no | 99.887 | yes |
glucose-util | yes | 94.101 | no |
glucose-ferment | no | 90.19 | no |
External links
@ref: 7024
culture collection no.: DSM 17497, ATCC BAA99, CIP 105259, CFML 90-83
straininfo link
- @ref: 82325
- straininfo: 87563
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 11931144 | Pseudomonas mosselii sp. nov., a novel species isolated from clinical specimens. | Dabboussi F, Hamze M, Singer E, Geoffroy V, Meyer JM, Izard D | Int J Syst Evol Microbiol | 10.1099/00207713-52-2-363 | 2002 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Genotype, Humans, Molecular Sequence Data, *Oligopeptides, Phenotype, Phylogeny, Pigments, Biological/biosynthesis, Pseudomonas/*classification/genetics/metabolism, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/analysis | Genetics |
Phylogeny | 30566068 | Pseudomonas sichuanensis sp. nov., isolated from hospital sewage. | Qin J, Hu Y, Feng Y, Xaioju L, Zong Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003188 | 2018 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Hospitals, Nucleic Acid Hybridization, *Phylogeny, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology | Transcriptome |
Genetics | 32974501 | High-quality draft genome sequences of Pseudomonas monteilii DSM 14164(T), Pseudomonas mosselii DSM 17497(T), Pseudomonas plecoglossicida DSM 15088(T), Pseudomonas taiwanensis DSM 21245(T) and Pseudomonas vranovensis DSM 16006(T): taxonomic considerations. | Pena A, Busquets A, Gomila M, Mulet M, Gomila RM, Garcia-Valdes E, Reddy TBK, Huntemann M, Varghese N, Ivanova N, Chen IM, Goker M, Woyke T, Klenk HP, Kyrpides N, Lalucat J | Access Microbiol | 10.1099/acmi.0.000067 | 2019 | ||
Phylogeny | 34803984 | Bactericidal Effect of Pseudomonas oryziphila sp. nov., a Novel Pseudomonas Species Against Xanthomonas oryzae Reduces Disease Severity of Bacterial Leaf Streak of Rice. | Yang R, Li S, Li Y, Yan Y, Fang Y, Zou L, Chen G | Front Microbiol | 10.3389/fmicb.2021.759536 | 2021 |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
7024 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17497) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17497 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
34713 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17259 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68371 | Automatically annotated from API 50CH acid | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
82325 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID87563.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
121147 | Curators of the CIP | Collection of Institut Pasteur (CIP 105259) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105259 |