Strain identifier
BacDive ID: 131142
Type strain: 
Species: Vibrio fortis
Strain Designation: AN60
Strain history: S. K. Das AN60.
NCBI tax ID(s): 212667 (species)
General
@ref: 22434
BacDive-ID: 131142
DSM-Number: 26067
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen
description: Vibrio fortis AN60 is a mesophilic animal pathogen that was isolated from mucus of the coral Fungia echinata.
NCBI tax id
- NCBI tax id: 212667
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22434 | <- S. Das, Inst. Life Sci., Bhubaneswar, India; AN60 |
| 67770 | S. K. Das AN60. |
doi: 10.13145/bacdive131142.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio fortis
- full scientific name: Vibrio fortis Thompson et al. 2003
@ref: 22434
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales, not validated
family: Vibrionaceae
genus: Vibrio
species: Vibrio fortis
full scientific name: Vibrio fortis Thompson et al. 2003
strain designation: AN60
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|---|
| 22434 | mucus of the coral Fungia echinata | Fungia echinata | Andaman Sea, Havelock Island | India | IND | Asia | 11.9983 | 92.9756 |
| 67770 | Mucus of the coral Fungia echinata from Andaman Sea | Fungia echinata | India | IND | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Cnidaria (Corals)
Safety information
risk assessment
- @ref: 22434
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Vibrio sp. AN60
- accession: JQ409371
- length: 1432
- database: ena
- NCBI tax ID: 1137285
Genome sequences
- @ref: 66792
- description: Vibrio fortis AN60
- accession: GCA_008756925
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 212667
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 90.915 | no |
| flagellated | yes | 89.075 | no |
| gram-positive | no | 98.778 | no |
| anaerobic | no | 97.111 | no |
| aerobic | yes | 90.995 | no |
| halophile | yes | 67.982 | no |
| spore-forming | no | 94.876 | no |
| thermophile | no | 99.448 | yes |
| glucose-util | yes | 92.299 | no |
| glucose-ferment | yes | 86.859 | no |
External links
@ref: 22434
culture collection no.: DSM 26067, JCM 18510
literature
- topic: Phylogeny
- Pubmed-ID: 23083057
- title: Presence of SXT integrating conjugative element in marine bacteria isolated from the mucus of the coral Fungia echinata from Andaman Sea.
- authors: Badhai J, Kumari P, Krishnan P, Ramamurthy T, Das SK
- journal: FEMS Microbiol Lett
- DOI: 10.1111/1574-6968.12033
- year: 2012
- mesh: Animals, Anthozoa/*microbiology, Bacteria/drug effects/genetics/*isolation & purification, Conjugation, Genetic, Microbial Sensitivity Tests, RNA, Ribosomal, 16S/genetics, *Water Microbiology
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22434 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26067 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26067) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |