Strain identifier
BacDive ID: 131135
Type strain: 
Species: Kitasatospora cheerisanensis
Strain Designation: YC 75
Strain history: IAM 15307 <-- KCTC 2395 <-- Y. R. Chung et al. YC75.
NCBI tax ID(s): 1348663 (strain), 81942 (species)
version 9.1 (current version)
General
@ref: 22427
BacDive-ID: 131135
DSM-Number: 101999
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, Gram-positive
description: Kitasatospora cheerisanensis YC 75 is a spore-forming, Gram-positive bacterium that was isolated from soil humus sample.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1348663 | strain |
| 81942 | species |
strain history
| @ref | history |
|---|---|
| 22427 | <- J. Wink, HZI, Braunschweig, Germany; YC 75 <- P. Kämpfer, Univ. of Giessen, Germany <- KCTC <- Y. R. Chung, Department of Microbioloy, Gyeongsang Natl. Univ. (GNU), Chinju, Korea |
| 67770 | IAM 15307 <-- KCTC 2395 <-- Y. R. Chung et al. YC75. |
doi: 10.13145/bacdive131135.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Kitasatospora
- species: Kitasatospora cheerisanensis
- full scientific name: Kitasatospora cheerisanensis Chung et al. 1999
@ref: 22427
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Kitasatospora
species: Kitasatospora cheerisanensis
full scientific name: Kitasatospora cheerisanensis Chung et al. 1999 emend. Nouioui et al. 2018
strain designation: YC 75
type strain: yes
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 90.5
multimedia
- @ref: 22427
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_101999.jpg
- caption: Medium 84 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22427 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 22427 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 22427 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 92.071 |
| 69481 | yes | 100 |
observation
| @ref | observation |
|---|---|
| 67770 | Production of Bafilomycin-like antifungal compound |
| 67770 | quinones: MK-9(H8) |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 22427 | soil humus sample | Cheerisan Mountain | Republic of Korea | KOR | Asia |
| 67770 | Soil humus sample at Cheerisan Mountain | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 22427
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22427
- description: Kitasatospora cheerisanensis 16S ribosomal RNA gene, partial sequence
- accession: AF050493
- length: 1508
- database: nuccore
- NCBI tax ID: 81942
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Kitasatospora cheerisanensis KCTC 2395 | 1348663.4 | wgs | patric | 1348663 |
| 66792 | Kitasatospora cheerisanensis KCTC 2395 | 2576861491 | draft | img | 1348663 |
| 67770 | Kitasatospora cheerisanensis KCTC 2395 | GCA_000696185 | scaffold | ncbi | 1348663 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 22427 | 75.8 | |
| 67770 | 73.5 | genome sequence analysis |
| 67770 | 73.6 | genome sequence analysis |
| 67770 | 75.8 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.343 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.813 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.071 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 76.494 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 90.5 | no |
External links
@ref: 22427
culture collection no.: DSM 101999, KCTC 2395, JCM 21757, IAM 15307
straininfo link
- @ref: 89589
- straininfo: 398148
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 10319499 | Kitasatospora cheerisanensis sp. nov., a new species of the genus Kitasatospora that produces an antifungal agent. | Chung YR, Sung KC, Mo HK, Son DY, Nam JS, Chun J, Bae KS | Int J Syst Bacteriol | 10.1099/00207713-49-2-753 | 1999 | Antifungal Agents/*biosynthesis/pharmacology, Bacterial Typing Techniques, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomycetaceae/*classification/cytology/genetics/*metabolism | Genetics |
| Genetics | 24948770 | Draft Genome Sequence of Kitasatospora cheerisanensis KCTC 2395, Which Produces Plecomacrolide against Phytopathogenic Fungi. | Hwang JY, Kim SH, Oh HR, Cho YJ, Chun J, Chung YR, Nam DH | Genome Announc | 10.1128/genomeA.00604-14 | 2014 | ||
| Metabolism | 25471184 | Analysis of a draft genome sequence of Kitasatospora cheerisanensis KCTC 2395 producing bafilomycin antibiotics. | Hwang JY, Kim SH, Oh HR, Kwon E, Nam DH | J Microbiol | 10.1007/s12275-015-4340-0 | 2014 | Actinomycetales/*genetics/isolation & purification/metabolism, Amino Acid Sequence, Antifungal Agents/*metabolism, Base Sequence, Diaminopimelic Acid/metabolism, Genes, Bacterial, *Genome, Bacterial, Macrolides/*metabolism, Multigene Family, Mycelium/growth & development, Phylogeny, Polyketide Synthases/genetics, Republic of Korea, *Sequence Analysis, DNA, Soil Microbiology, Substrate Specificity | Genetics |
| Enzymology | 30047086 | Biosynthesis of 2-amino-3-hydroxycyclopent-2-enone moiety of bafilomycin in Kitasatospora cheerisanensis KCTC2395. | Hanh NPK, Hwang JY, Oh HR, Kim GJ, Choi H, Nam DH | J Microbiol | 10.1007/s12275-018-8267-0 | 2018 | 5-Aminolevulinate Synthetase/genetics/*metabolism, Biosynthetic Pathways/*genetics, Cloning, Molecular, Coenzyme A Ligases/genetics/*metabolism, Coenzymes/analysis, Cyclopentanes/*metabolism, Enzyme Stability, Escherichia coli/genetics/metabolism, Gene Expression, Genetic Vectors, Hydrogen-Ion Concentration, Plasmids, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Streptomycetaceae/*enzymology/genetics/*metabolism | Metabolism |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22427 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101999 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101999) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 89589 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398148.1 |