Strain identifier

BacDive ID: 131135

Type strain: Yes

Species: Kitasatospora cheerisanensis

Strain Designation: YC 75

Strain history: IAM 15307 <-- KCTC 2395 <-- Y. R. Chung et al. YC75.

NCBI tax ID(s): 1348663 (strain), 81942 (species)

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General

@ref: 22427

BacDive-ID: 131135

DSM-Number: 101999

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Kitasatospora cheerisanensis YC 75 is a spore-forming, mesophilic bacterium that was isolated from soil humus sample.

NCBI tax id

NCBI tax idMatching level
1348663strain
81942species

strain history

@refhistory
22427<- J. Wink, HZI, Braunschweig, Germany; YC 75 <- P. Kämpfer, Univ. of Giessen, Germany <- KCTC <- Y. R. Chung, Department of Microbioloy, Gyeongsang Natl. Univ. (GNU), Chinju, Korea
67770IAM 15307 <-- KCTC 2395 <-- Y. R. Chung et al. YC75.

doi: 10.13145/bacdive131135.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Kitasatospora
  • species: Kitasatospora cheerisanensis
  • full scientific name: Kitasatospora cheerisanensis Chung et al. 1999

@ref: 22427

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Kitasatospora

species: Kitasatospora cheerisanensis

full scientific name: Kitasatospora cheerisanensis Chung et al. 1999 emend. Nouioui et al. 2018

strain designation: YC 75

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.8
69480100positive

multimedia

  • @ref: 22427
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_101999.jpg
  • caption: Medium 84 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22427GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
22427ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
22427positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

observation

@refobservation
67770Production of Bafilomycin-like antifungal compound
67770quinones: MK-9(H8)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
22427soil humus sampleCheerisan MountainRepublic of KoreaKORAsia
67770Soil humus sample at Cheerisan MountainRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 22427
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22427
  • description: Kitasatospora cheerisanensis 16S ribosomal RNA gene, partial sequence
  • accession: AF050493
  • length: 1508
  • database: ena
  • NCBI tax ID: 81942

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kitasatospora cheerisanensis KCTC 23951348663.4wgspatric1348663
66792Kitasatospora cheerisanensis KCTC 23952576861491draftimg1348663
67770Kitasatospora cheerisanensis KCTC 2395GCA_000696185scaffoldncbi1348663

GC content

@refGC-contentmethod
2242775.8
6777073.5genome sequence analysis
6777073.6genome sequence analysis
6777075.8thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno93.554no
gram-positiveyes92.22no
anaerobicno99.151no
halophileno93.968no
spore-formingyes93.554no
thermophileno97.831yes
glucose-utilyes89.25no
aerobicyes92.952no
flagellatedno97.764no
glucose-fermentno91.719no

External links

@ref: 22427

culture collection no.: DSM 101999, KCTC 2395, JCM 21757, IAM 15307

straininfo link

  • @ref: 89589
  • straininfo: 398148

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10319499Kitasatospora cheerisanensis sp. nov., a new species of the genus Kitasatospora that produces an antifungal agent.Chung YR, Sung KC, Mo HK, Son DY, Nam JS, Chun J, Bae KSInt J Syst Bacteriol10.1099/00207713-49-2-7531999Antifungal Agents/*biosynthesis/pharmacology, Bacterial Typing Techniques, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomycetaceae/*classification/cytology/genetics/*metabolismGenetics
Genetics24948770Draft Genome Sequence of Kitasatospora cheerisanensis KCTC 2395, Which Produces Plecomacrolide against Phytopathogenic Fungi.Hwang JY, Kim SH, Oh HR, Cho YJ, Chun J, Chung YR, Nam DHGenome Announc10.1128/genomeA.00604-142014
Metabolism25471184Analysis of a draft genome sequence of Kitasatospora cheerisanensis KCTC 2395 producing bafilomycin antibiotics.Hwang JY, Kim SH, Oh HR, Kwon E, Nam DHJ Microbiol10.1007/s12275-015-4340-02014Actinomycetales/*genetics/isolation & purification/metabolism, Amino Acid Sequence, Antifungal Agents/*metabolism, Base Sequence, Diaminopimelic Acid/metabolism, Genes, Bacterial, *Genome, Bacterial, Macrolides/*metabolism, Multigene Family, Mycelium/growth & development, Phylogeny, Polyketide Synthases/genetics, Republic of Korea, *Sequence Analysis, DNA, Soil Microbiology, Substrate SpecificityGenetics
Enzymology30047086Biosynthesis of 2-amino-3-hydroxycyclopent-2-enone moiety of bafilomycin in Kitasatospora cheerisanensis KCTC2395.Hanh NPK, Hwang JY, Oh HR, Kim GJ, Choi H, Nam DHJ Microbiol10.1007/s12275-018-8267-020185-Aminolevulinate Synthetase/genetics/*metabolism, Biosynthetic Pathways/*genetics, Cloning, Molecular, Coenzyme A Ligases/genetics/*metabolism, Coenzymes/analysis, Cyclopentanes/*metabolism, Enzyme Stability, Escherichia coli/genetics/metabolism, Gene Expression, Genetic Vectors, Hydrogen-Ion Concentration, Plasmids, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Streptomycetaceae/*enzymology/genetics/*metabolismMetabolism

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22427Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101999Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101999)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89589Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398148.1