Strain identifier
BacDive ID: 131130
Type strain: 
Species: Pedobacter rhizosphaerae
Strain Designation: 01-96
Variant: Isotype of BacDive ID 14103
Strain history: <- S.-W. Kwon, KACC; 01-96 <- H.-Y. Weon, Rural Development Administration (RDA), Suwon, Republic of Korea
NCBI tax ID(s): 390241 (species)
version 9 (current version)
General
@ref: 22422
BacDive-ID: 131130
DSM-Number: 25732
keywords: Bacteria
description: Pedobacter rhizosphaerae 01-96 is a bacterium that was isolated from rhizosphere soil of Chinese cabbage.
NCBI tax id
- NCBI tax id: 390241
- Matching level: species
strain history
- @ref: 22422
- history: <- S.-W. Kwon, KACC; 01-96 <- H.-Y. Weon, Rural Development Administration (RDA), Suwon, Republic of Korea
doi: 10.13145/bacdive131130.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Pedobacter
- species: Pedobacter rhizosphaerae
- full scientific name: Pedobacter rhizosphaerae Kwon et al. 2011
@ref: 22422
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Pedobacter
species: Pedobacter rhizosphaerae
full scientific name: Pedobacter rhizosphaerae Kwon et al. 2011
strain designation: 01-96
variant: Isotype of BacDive ID 14103
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22422
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 22422
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 22422
- sample type: rhizosphere soil of Chinese cabbage
- geographic location: Suwon (37° 16' 38.50'' N 126° 58' 59.60'' E)
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
Safety information
risk assessment
- @ref: 22422
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 22422
culture collection no.: DSM 25732, KACC 14938
straininfo link
- @ref: 89584
- straininfo: 398975
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21257686 | Pedobacter rhizosphaerae sp. nov. and Pedobacter soli sp. nov., isolated from rhizosphere soil of Chinese cabbage (Brassica campestris). | Kwon SW, Son JA, Kim SJ, Kim YS, Park IC, Bok JI, Weon HY | Int J Syst Evol Microbiol | 10.1099/ijs.0.026781-0 | 2011 | Base Composition, Brassica/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Pedobacter/*classification/genetics/*isolation & purification/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Soil Microbiology | Metabolism |
| Phylogeny | 23456708 | Pedobacter namyangjuensis sp. nov. isolated from soil and reclassification of Nubsella zeaxanthinifaciens Asker et al. 2008 as Pedobacter zeaxanthinifaciens comb. nov. | Kim DU, Kim YJ, Shin DH, Weon HY, Kwon SW, Seong CN, Ka JO | J Microbiol | 10.1007/s12275-013-2231-9 | 2013 | Aerobiosis, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Base Composition, Brassica/growth & development, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Temperature | Genetics |
| Phylogeny | 25563921 | Pedobacter ureilyticus sp. nov., isolated from tomato rhizosphere soil. | Ngo HTT, Kook M, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijs.0.000055 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lycopersicon esculentum/*microbiology, Molecular Sequence Data, Pedobacter/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/analogs & derivatives/chemistry, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22422 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25732 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25732) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 89584 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398975.1 |