Strain identifier
BacDive ID: 131116
Type strain: 
Species: Rhodanobacter lindaniclasticus
Strain history: <- S.-T. Lee, KAIST; Gsoil 549 <- W.-T. Im
NCBI tax ID(s): 75310 (species)
General
@ref: 22408
BacDive-ID: 131116
DSM-Number: 17931
keywords: 16S sequence, Bacteria, mesophilic
description: Rhodanobacter lindaniclasticus DSM 17931 is a mesophilic bacterium that was isolated from soil of ginseng field.
NCBI tax id
- NCBI tax id: 75310
- Matching level: species
strain history
- @ref: 22408
- history: <- S.-T. Lee, KAIST; Gsoil 549 <- W.-T. Im
doi: 10.13145/bacdive131116.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Rhodanobacteraceae
- genus: Rhodanobacter
- species: Rhodanobacter lindaniclasticus
- full scientific name: Rhodanobacter lindaniclasticus Nalin et al. 1999
@ref: 22408
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Rhodanobacteraceae
genus: Rhodanobacter
species: Rhodanobacter lindaniclasticus
full scientific name: Rhodanobacter lindaniclasticus Nalin et al. 1999
type strain: no
Culture and growth conditions
culture medium
- @ref: 22408
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 22408
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22408
- sample type: soil of ginseng field
- geographic location: Poecheon
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_23648.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_114;96_316;97_14056;98_17809;99_23648&stattab=map
- Last taxonomy: Rhodanobacter
- 16S sequence: AB245365
- Sequence Identity:
- Total samples: 294
- soil counts: 151
- aquatic counts: 85
- animal counts: 32
- plant counts: 26
Safety information
risk assessment
- @ref: 22408
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22408
- description: Rhodanobacter lindaniclasticus gene for 16S rRNA, partial sequence, strain: Gsoil 549
- accession: AB245365
- length: 1496
- database: ena
- NCBI tax ID: 75310
External links
@ref: 22408
culture collection no.: DSM 17931, Gsoil 549
straininfo link
- @ref: 89573
- straininfo: 396632
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22408 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17931 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17931) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89573 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396632.1 |