Strain identifier
BacDive ID: 131115
Type strain: 
Species: Salegentibacter flavus
Strain Designation: Fg 69
Variant: Isotype of BacDive ID 5640
Strain history: <- CIP <- E. Ivanova, Swinburne Univ. of Technol., IRIS, Australia <- N. Gorshkova
NCBI tax ID(s): 287099 (species)
version 8.1 (current version)
General
@ref: 22407
BacDive-ID: 131115
DSM-Number: 22702
keywords: Bacteria, mesophilic
description: Salegentibacter flavus Fg 69 is a mesophilic bacterium that was isolated from sediment.
NCBI tax id
- NCBI tax id: 287099
- Matching level: species
strain history
- @ref: 22407
- history: <- CIP <- E. Ivanova, Swinburne Univ. of Technol., IRIS, Australia <- N. Gorshkova
doi: 10.13145/bacdive131115.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Salegentibacter
- species: Salegentibacter flavus
- full scientific name: Salegentibacter flavus Ivanova et al. 2006
@ref: 22407
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Salegentibacter
species: Salegentibacter flavus
full scientific name: Salegentibacter flavus Ivanova et al. 2006 emend. Hahnke et al. 2016
strain designation: Fg 69
variant: Isotype of BacDive ID 5640
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22407 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 119389 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
- @ref: 22407
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22407
- sample type: sediment
- geographic location: Sea of Japan, Chazhma Bay
- country: Russia
- origin.country: RUS
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Terrestrial | #Sediment |
Safety information
risk assessment
- @ref: 22407
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
- @ref: 22407
- GC-content: 39.8
- method: sequence analysis
External links
@ref: 22407
culture collection no.: DSM 22702, CIP 107843, KMM 6000
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16514031 | Salegentibacter flavus sp. nov. | Ivanova EP, Bowman JP, Christen R, Zhukova NV, Lysenko AM, Gorshkova NM, Mitik-Dineva N, Sergeev AF, Mikhailov VV | Int J Syst Evol Microbiol | 10.1099/ijs.0.64087-0 | 2006 | DNA, Ribosomal/chemistry, Fatty Acids/analysis, Flavobacteriaceae/chemistry/*classification/genetics, Geologic Sediments/*microbiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA | Phenotype |
| Phylogeny | 29856310 | Salegentibacter sediminis sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from coastal sediment. | Liang QY, Xu ZX, Zhang J, Chen GJ, Du ZJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002849 | 2018 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22407 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22702 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22702) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 119389 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107843 | Collection of Institut Pasteur (CIP 107843) |