Strain identifier

BacDive ID: 131113

Type strain: No

Species: Enterobacter cancerogenus

Strain Designation: M004

Strain history: <- W.-S. Tan, Univ. Malaya; M004 <- W.-S. Tan, Univ. Malaya;

NCBI tax ID(s): 69218 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22405

BacDive-ID: 131113

DSM-Number: 100876

keywords: genome sequence, Bacteria, mesophilic

description: Enterobacter cancerogenus M004 is a mesophilic bacterium that was isolated from Sungai Tua Waterfall, between Selayang and Ulu Yam.

NCBI tax id

  • NCBI tax id: 69218
  • Matching level: species

strain history

  • @ref: 22405
  • history: <- W.-S. Tan, Univ. Malaya; M004 <- W.-S. Tan, Univ. Malaya;

doi: 10.13145/bacdive131113.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter cancerogenus
  • full scientific name: Enterobacter cancerogenus (Urosevic 1966) Dickey and Zumoff 1988
  • synonyms

    @refsynonym
    20215Enterobacter taylorae
    20215Erwinia cancerogena

@ref: 22405

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter cancerogenus

full scientific name: Enterobacter cancerogenus (Urosevic 1966) Dickey and Zumoff 1988

strain designation: M004

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlink
22405COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
22405TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf

culture temp

  • @ref: 22405
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

  • @ref: 68368
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
22405+---+------+++-++++++/-
22405+---+---++-+++-+++++-

Isolation, sampling and environmental information

isolation

  • @ref: 22405
  • sample type: Sungai Tua Waterfall, between Selayang and Ulu Yam
  • geographic location: Selangor
  • country: Malaysia
  • origin.country: MYS
  • continent: Asia
  • latitude: 3.3333
  • longitude: 101.7

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

Safety information

risk assessment

  • @ref: 22405
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterobacter cancerogenus M004GCA_000773965contigncbi69218
66792Enterobacter cancerogenus M00469218.3wgspatric69218

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.034no
anaerobicno98.622no
halophileno89.345no
spore-formingno94.776no
glucose-utilyes95.702no
flagellatedno62.118no
thermophileno99.463yes
motileyes91.21no
aerobicno56.254no
glucose-fermentyes88.351no

External links

@ref: 22405

culture collection no.: DSM 100876

straininfo link

  • @ref: 89572
  • straininfo: 406115

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22405Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100876Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100876)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
89572Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406115.1