Strain identifier
BacDive ID: 131113
Type strain:
Species: Enterobacter cancerogenus
Strain Designation: M004
Strain history: <- W.-S. Tan, Univ. Malaya; M004 <- W.-S. Tan, Univ. Malaya;
NCBI tax ID(s): 69218 (species)
General
@ref: 22405
BacDive-ID: 131113
DSM-Number: 100876
keywords: genome sequence, Bacteria, mesophilic
description: Enterobacter cancerogenus M004 is a mesophilic bacterium that was isolated from Sungai Tua Waterfall, between Selayang and Ulu Yam.
NCBI tax id
- NCBI tax id: 69218
- Matching level: species
strain history
- @ref: 22405
- history: <- W.-S. Tan, Univ. Malaya; M004 <- W.-S. Tan, Univ. Malaya;
doi: 10.13145/bacdive131113.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Enterobacter
- species: Enterobacter cancerogenus
- full scientific name: Enterobacter cancerogenus (Urosevic 1966) Dickey and Zumoff 1988
synonyms
@ref synonym 20215 Enterobacter taylorae 20215 Erwinia cancerogena
@ref: 22405
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Enterobacter
species: Enterobacter cancerogenus
full scientific name: Enterobacter cancerogenus (Urosevic 1966) Dickey and Zumoff 1988
strain designation: M004
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link |
---|---|---|---|
22405 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf |
22405 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf |
culture temp
- @ref: 22405
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
- @ref: 68368
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
22405 | + | - | - | - | + | - | - | - | - | - | - | + | + | + | - | + | + | + | + | + | +/- |
22405 | + | - | - | - | + | - | - | - | + | + | - | + | + | + | - | + | + | + | + | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 22405
- sample type: Sungai Tua Waterfall, between Selayang and Ulu Yam
- geographic location: Selangor
- country: Malaysia
- origin.country: MYS
- continent: Asia
- latitude: 3.3333
- longitude: 101.7
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #River (Creek)
Safety information
risk assessment
- @ref: 22405
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Enterobacter cancerogenus M004 | GCA_000773965 | contig | ncbi | 69218 |
66792 | Enterobacter cancerogenus M004 | 69218.3 | wgs | patric | 69218 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
gram-positive | no | 98.034 | no |
anaerobic | no | 98.622 | no |
halophile | no | 89.345 | no |
spore-forming | no | 94.776 | no |
glucose-util | yes | 95.702 | no |
flagellated | no | 62.118 | no |
thermophile | no | 99.463 | yes |
motile | yes | 91.21 | no |
aerobic | no | 56.254 | no |
glucose-ferment | yes | 88.351 | no |
External links
@ref: 22405
culture collection no.: DSM 100876
straininfo link
- @ref: 89572
- straininfo: 406115
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22405 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100876 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100876) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68368 | Automatically annotated from API 20E | |||
89572 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406115.1 |