Strain identifier
BacDive ID: 131107
Type strain: 
Species: Anaerofustis stercorihominis
Strain Designation: WHC-424-CC-1
Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; WHC-424-CC-1
NCBI tax ID(s): 214853 (species)
version 9.1 (current version)
General
@ref: 22399
BacDive-ID: 131107
DSM-Number: 28733
keywords: genome sequence, 16S sequence, Bacteria, anaerobe
description: Anaerofustis stercorihominis WHC-424-CC-1 is an anaerobe bacterium that was isolated from caecal content; TNFdeltaARE/+ C57BL/6 mouse.
NCBI tax id
- NCBI tax id: 214853
- Matching level: species
strain history
- @ref: 22399
- history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; WHC-424-CC-1
doi: 10.13145/bacdive131107.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Eubacteriaceae
- genus: Anaerofustis
- species: Anaerofustis stercorihominis
- full scientific name: Anaerofustis stercorihominis Finegold et al. 2004
@ref: 22399
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Eubacteriaceae
genus: Anaerofustis
species: Anaerofustis stercorihominis
full scientific name: Anaerofustis stercorihominis Finegold et al. 2004
strain designation: WHC-424-CC-1
type strain: no
Morphology
colony morphology
- @ref: 22399
- incubation period: 2-3 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22399 | FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) | yes | https://mediadive.dsmz.de/medium/1203 | Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water |
| 22399 | BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) | yes | https://mediadive.dsmz.de/medium/58 | Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water |
| 22399 | WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) | yes | https://mediadive.dsmz.de/medium/339 | Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water |
culture temp
- @ref: 22399
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 22399
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 22399
- sample type: caecal content; TNFdeltaARE/+ C57BL/6 mouse
- geographic location: Freising
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Muridae (Mouse/Rat) |
| #Host Body-Site | #Gastrointestinal tract | #Large intestine |
| #Host Body Product | #Gastrointestinal tract | #Caecal content |
taxonmaps
- @ref: 69479
- File name: preview.99_4758.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_488;96_2353;97_2864;98_3565;99_4758&stattab=map
- Last taxonomy: Anaerofustis stercorihominis subclade
- 16S sequence: KR364732
- Sequence Identity:
- Total samples: 20433
- soil counts: 177
- aquatic counts: 375
- animal counts: 19796
- plant counts: 85
Safety information
risk assessment
- @ref: 22399
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22399
- description: Anaerofustis stercorihominis strain WHC-424-CC-1 16S ribosomal RNA gene, partial sequence
- accession: KR364732
- length: 1432
- database: nuccore
- NCBI tax ID: 214853
Genome sequences
- @ref: 66792
- description: Anaerofustis stercorihominis DSM 28733
- accession: GCA_024623185
- assembly level: contig
- database: ncbi
- NCBI tax ID: 214853
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 78.318 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 87.882 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 97.988 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 62.666 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 86.543 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 85.026 | no |
External links
@ref: 22399
culture collection no.: DSM 28733
straininfo link
- @ref: 89566
- straininfo: 400000
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22399 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28733 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28733) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89566 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400000.1 |