Strain identifier
BacDive ID: 131106
Type strain: 
Species: Anaerotruncus colihominis
Strain Designation: JM4-15
Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; JM4-15
NCBI tax ID(s): 169435 (species)
version 8.1 (current version)
General
@ref: 22398
BacDive-ID: 131106
DSM-Number: 28734
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Anaerotruncus colihominis JM4-15 is an anaerobe, mesophilic bacterium that was isolated from colonic mucosa; wildtype C57BL/6 mouse.
NCBI tax id
- NCBI tax id: 169435
- Matching level: species
strain history
- @ref: 22398
- history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; JM4-15
doi: 10.13145/bacdive131106.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Anaerotruncus
- species: Anaerotruncus colihominis
- full scientific name: Anaerotruncus colihominis Lawson et al. 2004
@ref: 22398
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Oscillospiraceae
genus: Anaerotruncus
species: Anaerotruncus colihominis
full scientific name: Anaerotruncus colihominis Lawson et al. 2004
strain designation: JM4-15
type strain: no
Morphology
colony morphology
- @ref: 22398
- incubation period: 2-3 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22398 | BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) | yes | https://mediadive.dsmz.de/medium/58 | Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water |
| 22398 | WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) | yes | https://mediadive.dsmz.de/medium/339 | Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water |
culture temp
- @ref: 22398
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 22398
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 22398
- sample type: colonic mucosa; wildtype C57BL/6 mouse
- geographic location: Freising
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Muridae (Mouse/Rat) |
| #Host Body-Site | #Gastrointestinal tract | #Large intestine |
taxonmaps
- @ref: 69479
- File name: preview.99_5477.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_154;96_2651;97_3251;98_4090;99_5477&stattab=map
- Last taxonomy: Anaerotruncus colihominis subclade
- 16S sequence: KR364734
- Sequence Identity:
- Total samples: 53235
- soil counts: 286
- aquatic counts: 361
- animal counts: 52440
- plant counts: 148
Safety information
risk assessment
- @ref: 22398
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22398
- description: Anaerotruncus colihominis strain JM4-15 16S ribosomal RNA gene, partial sequence
- accession: KR364734
- length: 1414
- database: ena
- NCBI tax ID: 169435
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anaerotruncus colihominis JM4-15 | GCA_010206195 | contig | ncbi | 169435 |
| 66792 | Anaerotruncus colihominis DSM 28734 | GCA_024623195 | contig | ncbi | 169435 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 66.537 | no |
| flagellated | no | 81.292 | no |
| gram-positive | yes | 87.051 | no |
| anaerobic | yes | 99.438 | yes |
| aerobic | no | 98.447 | yes |
| halophile | no | 92.862 | no |
| spore-forming | no | 75.292 | no |
| glucose-util | yes | 84.753 | no |
| thermophile | no | 94.781 | yes |
| glucose-ferment | yes | 67.259 | no |
External links
@ref: 22398
culture collection no.: DSM 28734
straininfo link
- @ref: 89565
- straininfo: 398263
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22398 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28734 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28734) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89565 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398263.1 |