Strain identifier

BacDive ID: 13110

Type strain: Yes

Species: Pseudomonas gessardii

Culture col. no.: CCUG 43164, DSM 17152, CCM 4986, CFML 95-251, CIP 105469

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6793

BacDive-ID: 13110

DSM-Number: 17152

keywords: aerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Pseudomonas gessardii CCUG 43164 is an aerobe, mesophilic bacterium that was isolated from mineral water.

strain history: <- CCM <- CCUG <- CIP <- D. Izard

doi: 10.13145/bacdive13110.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas gessardii
  • full scientific name: Pseudomonas gessardii Verhille et al. 1999

@ref: 6793

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas gessardii

full scientific name: Pseudomonas gessardii Verhille et al. 1999 emend. van den Beld et al. 2016

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6793CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf
42005MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)

culture temp

@refgrowthtypetemperaturerange
6793positivegrowth30mesophilic
42005positivegrowth30mesophilic
55703positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 55703
  • oxygen tolerance: aerobe

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    55703C12:02.812
    55703C14:0114
    55703C15:01.615
    55703C16:025.516
    55703C17:00.717
    55703C18:00.318
    55703C10:0 3OH2.811.423
    55703C12:0 2OH6.513.178
    55703C12:0 3OH4.413.455
    55703C15:0 ISO 3OH2.216.135
    55703C16:1 ω7c26.515.819
    55703C17:0 CYCLO1316.888
    55703C18:1 ω7c /12t/9t5.917.824
    55703C18:2 ω6,9c/C18:0 ANTE0.417.724
    55703Unidentified0.310.469
    55703Unidentified1.410.662
    55703Unidentified0.712.268
    55703Unidentified316.297
    55703Unidentified0.817.2
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6793+--+--+-+-+++-+++++-+
6793+--+--+-+-+++-+++++-+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling date
6793mineral waterFranceFRAEurope
55703Mineral watersFranceFRAEurope1995

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

Safety information

risk assessment

  • @ref: 6793
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6793
  • description: Pseudomonas gessardii 16S ribosomal RNA gene, complete sequence
  • accession: AF074384
  • length: 1516
  • database: ena
  • NCBI tax ID: 78544

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas gessardii BS2982GCA_900101185contigncbi78544
66792Pseudomonas gessardii DSM 17152GCA_001983165contigncbi78544
66792Pseudomonas gessardii DSM 17152GCA_009671285contigncbi78544
66792Pseudomonas gessardii DSM 17152TGCA_900625085contigncbi78544
66792Pseudomonas gessardii WS 5049GCA_012986655contigncbi78544
66792Pseudomonas gessardii WS 5408GCA_012986615contigncbi78544
66792Pseudomonas gessardii G4779GCA_012986645contigncbi78544
66792Pseudomonas gessardii strain BS298278544.3wgspatric78544
66792Pseudomonas gessardii strain DSM 1715278544.5wgspatric78544
66792Pseudomonas gessardii strain DSM 1715278544.11wgspatric78544
66792Pseudomonas gessardii strain DSM 17152T78544.9wgspatric78544
66792Pseudomonas gessardii LMG 216042636416191permanentimg78544

External links

@ref: 6793

culture collection no.: CCUG 43164, DSM 17152, CCM 4986, CFML 95-251, CIP 105469

straininfo link

@refpassport
20218http://www.straininfo.net/strains/386526
20218http://www.straininfo.net/strains/388718
20218http://www.straininfo.net/strains/303539
20218http://www.straininfo.net/strains/154267

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6793Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17152)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17152
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42005Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17492
55703Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 43164)https://www.ccug.se/strain?id=43164
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)