Strain identifier
BacDive ID: 131094
Type strain: 
Species: Paenibacillus lactis
Strain Designation: ptZ-260P
Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; ptZ-260P
NCBI tax ID(s): 228574 (species)
version 8.1 (current version)
General
@ref: 22386
BacDive-ID: 131094
DSM-Number: 28626
keywords: 16S sequence, Bacteria, mesophilic
description: Paenibacillus lactis ptZ-260P is a mesophilic bacterium that was isolated from caecal content; TNFdeltaARE/+ C57BL/6 mouse.
NCBI tax id
- NCBI tax id: 228574
- Matching level: species
strain history
- @ref: 22386
- history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; ptZ-260P
doi: 10.13145/bacdive131094.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus lactis
- full scientific name: Paenibacillus lactis Scheldeman et al. 2004
@ref: 22386
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus lactis
full scientific name: Paenibacillus lactis Scheldeman et al. 2004
strain designation: ptZ-260P
type strain: no
Morphology
colony morphology
- @ref: 22386
- incubation period: 1-2 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22386 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 22386 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
| 22386 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | yes | https://mediadive.dsmz.de/medium/381 | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22386 | positive | growth | 30 | mesophilic |
| 22386 | positive | growth | 37 | mesophilic |
Isolation, sampling and environmental information
isolation
- @ref: 22386
- sample type: caecal content; TNFdeltaARE/+ C57BL/6 mouse
- geographic location: Freising
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Muridae (Mouse/Rat) |
| #Host Body-Site | #Gastrointestinal tract | #Large intestine |
| #Host Body Product | #Gastrointestinal tract | #Caecal content |
taxonmaps
- @ref: 69479
- File name: preview.99_5.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_5;97_5;98_5;99_5&stattab=map
- Last taxonomy: Paenibacillus ihbetae
- 16S sequence: KR364781
- Sequence Identity:
- Total samples: 1153
- soil counts: 443
- aquatic counts: 111
- animal counts: 206
- plant counts: 393
Safety information
risk assessment
- @ref: 22386
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22386
- description: Paenibacillus sp. pT2-260P 16S ribosomal RNA gene, partial sequence
- accession: KR364781
- length: 1442
- database: ena
- NCBI tax ID: 1796642
External links
@ref: 22386
culture collection no.: DSM 28626
straininfo link
- @ref: 89556
- straininfo: 399714
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22386 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28626 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28626) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89556 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399714.1 |